Browse Element(s) Details


OsAffx.19518.1.S1_at

Description tigr:9640.m00537
TID=OsAffx.19518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0617010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06150OsAffx.19516.1.S1_at11/1112+2897747..2899071uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06160NANA12+2910704..2911579uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06170OsAffx.19518.1.S1_at10/1112+2919443..2921117hypothetical protein
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19518.1.S1_at--421--9851Chr12:2921061..2921085 (25 bp)
TACAATGCTGCGTGCACTAGCTCAG
LOC_Os12g06170
OsAffx.19518.1.S1_at--210--7351Chr12:2921050..2921074 (25 bp)
GTGCACTAGCTCAGCTCATACAGAG
LOC_Os12g06170
OsAffx.19518.1.S1_at--1150--1571Chr12:2921043..2921067 (25 bp)
AGCTCAGCTCATACAGAGACCTGAA
LOC_Os12g06170
OsAffx.19518.1.S1_at--178--7031Chr12:2920322..2920346 (25 bp)
GTACAGAACAGAGAAATGCCAAGCT
LOC_Os12g06170
OsAffx.19518.1.S1_at--881--8891Chr12:2920230..2920254 (25 bp)
TGAGCTAACTGCATTGAATTTGATT
LOC_Os12g06170
OsAffx.19518.1.S1_at--913--5891Chr12:2920100..2920123 (24 bp)
GAGCTCATAATTGGGCTCCCTAGGC
LOC_Os12g06170
OsAffx.19518.1.S1_at--984--2151NONE
ACACTCGTATATGTTCTTTGTCCGG
NONE
OsAffx.19518.1.S1_at--774--251Chr12:2919529..2919550 (22 bp)
ATATGTTCTTTGTCCGGATGTTCGA
LOC_Os12g06170
OsAffx.19518.1.S1_at--23--10831Chr12:2919520..2919544 (25 bp)
TTGTCCGGATGTTCGACGTCTGCAT
LOC_Os12g06170
OsAffx.19518.1.S1_at--246--8911Chr12:2919500..2919524 (25 bp)
TGCATCCTCCCATGGGAATAAAACC
LOC_Os12g06170
OsAffx.19518.1.S1_at--408--5191Chr12:2919485..2919509 (25 bp)
GAATAAAACCTGCAAACCCTTGAAG
LOC_Os12g06170
Target Sequence 
TACAATGCTGCGTGCACTAGCTCAGCTCATACAGAGACCTGAAAGTCACTCTCTCTCACACACAAATACCACTAAGAAAG
CTAGTACAGAACAGAGAAATGCCAAGCTTAAATATATGGGTAGTTGGGGTGATGAGCTAACTGCATTGAATTTGATTTGG
CAAGAGCTCATAATTGGGCTCCCTAGGCCTGAGACCCAGCAGAATCTTTGGACAAAATTTTACAACACTCGTATATGTTC
TTTGTCCGGATGTTCGACGTCTGCATCCTCCCATGGGAATAAAACCTGCAAACCCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis