Browse Element(s) Details


Os.424.1.S1_at

Description gb:AK059233.1
DB_XREF= gi:32969251
TID=Os.424.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.424 (NCBI UniGene Cluster)
UG_TITLE=OsE2F2 mRNA for E2F homolog, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E10, full insert sequence.
FL= gb:AK059233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0620011/11Transcription factor E2F/dimerisation partner family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06170OsAffx.19518.1.S1_at10/1112+2919443..2921117hypothetical protein
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0051302biological_processregulation of cell division
GO:0005667cellular_componenttranscription factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.424.1.S1_at--700--791Chr12:2939254..2939278 (25 bp)
ATGGGCTACTGGTGACCACGTGAAA
LOC_Os12g06200
Os.424.1.S1_at--809--8231Chr12:2939176..2939200 (25 bp)
GGCAAACTGACAGCTTCCTGGATCA
LOC_Os12g06200
Os.424.1.S1_at--1021--5291Chr12:2939150..2939174 (25 bp)
GAAGGCATCACAACGTCCTGATCAT
LOC_Os12g06200
Os.424.1.S1_at--1077--8831Chr12:2939132..2939156 (25 bp)
TGATCATTCAGGTCTTGACTGGCAA
LOC_Os12g06200
Os.424.1.S1_at--545--2351Chr12:2939093..2939117 (25 bp)
AAAGCTGAATTTGTGGTTCCTGTGA
LOC_Os12g06200
Os.424.1.S1_at--1073--1111Chr12:2939013..2939037 (25 bp)
AGTGCTGCAAGCTCCGGGACTAAAA
LOC_Os12g06200
Os.424.1.S1_at--529--9831Chr12:2938905..2938929 (25 bp)
TAAAAATCACTGCATCACTGGTGCC
LOC_Os12g06200
Os.424.1.S1_at--115--1111Chr12:2938810..2938834 (25 bp)
AGTGTCTTGCTGGATCAGCCTTCCA
LOC_Os12g06200
Os.424.1.S1_at--442--10671Chr12:2938790..2938814 (25 bp)
TTCCATTGGCCATTGCTGGGCAATC
LOC_Os12g06200
Os.424.1.S1_at--717--4711Chr12:2938776..2938800 (25 bp)
GCTGGGCAATCACCTGTAACATTTC
LOC_Os12g06200
Os.424.1.S1_at--640--7051Chr12:2938761..2938785 (25 bp)
GTAACATTTCGTTCTCTTTCATTTT
LOC_Os12g06200
Target Sequence 
ATGGGCTACTGGTGACCACGTGAAAACCGTAGAAGAGAGGTTCAGGGAATGGCTGTAAGCCTGTGATGATGTACAGATGG
CAAACTGACAGCTTCCTGGATCAAGAAGGCATCACAACGTCCTGATCATTCAGGTCTTGACTGGCAAGATGAACGAATCC
TAAAGCTGAATTTGTGGTTCCTGTGAGTTGTATGTTGTATCTCACAACAAAAAGGAGCGTACAGCTAGGTTTAAGCTAGA
CAGTGCTGCAAGCTCCGGGACTAAAATTATTCAGGATTCAGGAAGCGCTGTAAAACTTGAAGCTGACTCTGTTGTACTAT
AAATTTTTCGTATTCTTGATGGTATCTATTAAAAATCACTGCATCACTGGTGCCNATCCTGAAATGGACTGATGCAGTGA
AGTAGTAGGTAGCTTTACATATGACAACTTGACAAGTCTGTTNTCAGTGTCTTGCTGGATCAGCCTTCCATTGGCCATTG
CTGGGCAATCACCTGTAACATTTCGTTCTCTTTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis