Browse Element(s) Details


OsAffx.7499.1.S1_at

Description tigr:9640.m00543
TID=OsAffx.7499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0623011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7499.1.S1_at--625--4651Chr12:2964807..2964831 (25 bp)
GCGTCGTATGTACATTGCACTTTTT
LOC_Os12g06230
OsAffx.7499.1.S1_at--26--5851Chr12:2964841..2964865 (25 bp)
GACCAGCAACACGAATTGTCCCAGA
LOC_Os12g06230
OsAffx.7499.1.S1_at--982--6451Chr12:2964874..2964898 (25 bp)
GATCAAGGATCGTACACATTCAAAA
LOC_Os12g06230
OsAffx.7499.1.S1_at--904--651Chr12:2964928..2964952 (25 bp)
ATGAATTTACACAGCACTCCCAATC
LOC_Os12g06230
OsAffx.7499.1.S1_at--741--7091Chr12:2964959..2964983 (25 bp)
GTCAAAGGGTCATCCTTGCTATGGA
LOC_Os12g06230
OsAffx.7499.1.S1_at--167--4811Chr12:2964976..2965000 (25 bp)
GCTATGGAAGGAGTGCCACCAGAAT
LOC_Os12g06230
OsAffx.7499.1.S1_at--256--5731Chr12:2965117..2965141 (25 bp)
GACTGCGATCTCATCCCTAAGATAA
LOC_Os12g06230
OsAffx.7499.1.S1_at--471--391Chr12:2965175..2965199 (25 bp)
ATCAGGCAAGTGATCCCGGTTGTGG
LOC_Os12g06230
OsAffx.7499.1.S1_at--305--7531Chr12:2965196..2965220 (25 bp)
GTGGACAAAACACAGCTTTATCAGT
LOC_Os12g06230
OsAffx.7499.1.S1_at--844--5511Chr12:2965288..2965312 (25 bp)
GAAAATCCTCGGCTACTAGTCATAA
LOC_Os12g06230
OsAffx.7499.1.S1_at--422--7691Chr12:2965325..2965349 (25 bp)
GGGTATCCTATCACATAGACTCCGA
LOC_Os12g06230
Target Sequence 
GCGTCGTATGTACATTGCACTTTTTTTGGATGCAGACCAGCAACACGAATTGTCCCAGAAAGCATTTGATCAAGGATCGT
ACACATTCAAAACAACAAAGCTTGAATTTCAACCTTTCAAAATGAATTTACACAGCACTCCCAATCCACTACGTCAAAGG
GTCATCCTTGCTATGGAAGGAGTGCCACCAGAATCATGGAACAAGCCAGCTATAACAGAACTCTTGGACAATTGTTGTAT
CGTTGAAGAGCTATATGGAGAGCACCATATAAATGACCTTTCAATTTTCAAGCTAGCTGCATGGACAAGAGACTGCGATC
TCATCCCTAAGATAATTGACTGGAGCATTGAAACAGACGAAGAAGAACATCAGGCAAGTGATCCCGGTTGTGGACAAAAC
ACAGCTTTATCAGTGATTTTAATACACATCGAGAAGTTATTTGATTACAACATTGAAAACGGTGGGAGCCAGAACGACAA
AGAAAATCCTCGGCTACTAGTCATAAAAACATTCCAATGGGTATCCTATCACATAGACTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis