Browse Element(s) Details


Os.54124.1.S1_at

Description gb:AK103100.1
DB_XREF= gi:32988309
TID=Os.54124.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118N16, full insert sequence.
FL= gb:AK102059.1 gb:AK105655.1 gb:AK103100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0625011/11expressed protein
LOC_Os06g181503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g036101/111,3-beta-glucan synthase component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54124.1.S1_at--198--9231Chr12:2970535..2970559 (25 bp)
TCCAGCTCGCGCAAAATGGCTAAAA
LOC_Os12g06250
Os.54124.1.S1_at--744--3211Chr12:2970810..2970834 (25 bp)
CAAGGTGATCATGTGTTATTTCGTA
LOC_Os12g06250
Os.54124.1.S1_at--931--193Chr12:2970827..2970851 (25 bp)
ATTTCGTATGTGTTTTGCCGCTGAT
LOC_Os12g06250
Os.54124.1.S1_at--229--6812Chr12:2970838..2970862 (25 bp)
GTTTTGCCGCTGATTTGCTGATTCA
LOC_Os12g06250
Os.54124.1.S1_at--260--4752Chr12:2970854..2970878 (25 bp)
GCTGATTCAATCTTATTGCTCTTCT
LOC_Os12g06250
Os.54124.1.S1_at--853--3652Chr12:2970874..2970898 (25 bp)
CTTCTTCTTGATCTGTGTATTTGTT
LOC_Os12g06250
Os.54124.1.S1_at--212--10371Chr12:2970963..2970987 (25 bp)
TTTTTTCTACACGAAGGCTGTCTGG
LOC_Os12g06250
Os.54124.1.S1_at--78--8332Chr12:2970978..2971002 (25 bp)
GGCTGTCTGGATGTTGGTTGACACT
LOC_Os12g06250
Os.54124.1.S1_at--572--3231Chr12:2971008..2971032 (25 bp)
CAAGATCTTGTGATGACAGTTCTGT
LOC_Os12g06250
Os.54124.1.S1_at--158--5652Chr12:2971022..2971046 (25 bp)
GACAGTTCTGTTTTTAGGATTATTT
LOC_Os12g06250
Os.54124.1.S1_at--305--8771Chr12:2971061..2971085 (25 bp)
TGTTAGGTTAGCAATTGTTGACAGC
LOC_Os12g06250
Target Sequence 
TCCAGCTCGCGCAAAATGGCTAAAAGCCGGCCGGACAACATCGCTGCAGCCAGGCTCAGCCAGCGAGCATGTTGCGGCGT
CCTCCGCCGCCGCCGTGGAGACAGGCTTGGAGTTCAGCAAGGTTGACGGCGAGGCGCACGCACCCGCTCCCCTGTGCTTG
GCAAGGCACCAACAGTTGTTCTGTGTTCATCAAGCAAGGATGCGCTGAATCGCATTGCAGTTGCTGGTGGTCTTGATTTG
GATCCAAAAAGGTCAGGCGTCGAGATCCAAAAAAGCAAGGTGATCATGTGTTATTTCGTATGTGTTTTGCCGCTGATTTG
CTGATTCAATCTTATTGCTCTTCTTCTTGATCTGTGTATTTGTTTAATGTATTAATGCTCCAAAAAAATAGGTTGGGGGA
TTAGATCTGTTGGTTGGGAATGGATTTTTTTTTTTCTACACGAAGGCTGTCTGGATGTTGGTTGACACTGGGGACAAGAT
CTTGTGATGACAGTTCTGTTTTTAGGATTATTTTCATGATTTAACTTTGTTAGGTTAGCAATTGTTGACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis