Browse Element(s) Details


Os.22827.1.A1_at

Description gb:AK064766.1
DB_XREF= gi:32974784
TID=Os.22827.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A01, full insert sequence.
FL= gb:AK064766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0628010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein
LOC_Os12g06290OsAffx.7500.1.S1_at10/1112+3006927..3008775hypothetical protein
LOC_Os12g06300Os.54296.1.S1_at9/1112+3012312..3014620hypothetical protein
LOC_Os12g06314NANA12+3020031..3020530NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22827.1.A1_at--66--1711Chr12:2995335..2995359 (25 bp)
ACCAACGTGCTGTGCGTCAGCAAGT
LOC_Os12g06280
Os.22827.1.A1_at--743--2571Chr12:2995338..2995362 (25 bp)
AACGTGCTGTGCGTCAGCAAGTGCG
LOC_Os12g06280
Os.22827.1.A1_at--444--7111Chr12:2995350..2995374 (25 bp)
GTCAGCAAGTGCGGGACGTGCCCCA
LOC_Os12g06280
Os.22827.1.A1_at--699--2851Chr12:2995356..2995380 (25 bp)
AAGTGCGGGACGTGCCCCACGGTGT
LOC_Os12g06280
Os.22827.1.A1_at--1138--7591Chr12:2995362..2995386 (25 bp)
GGGACGTGCCCCACGGTGTGCTCGT
LOC_Os12g06280
Os.22827.1.A1_at--393--7611Chr12:2995407..2995431 (25 bp)
GGGAACTATAATCCGGTGCTGTCGC
LOC_Os12g06280
Os.22827.1.A1_at--995--2511Chr12:2995410..2995434 (25 bp)
AACTATAATCCGGTGCTGTCGCCAC
LOC_Os12g06280
Os.22827.1.A1_at--867--351Chr12:2995414..2995438 (25 bp)
ATAATCCGGTGCTGTCGCCACCGAA
LOC_Os12g06280
Os.22827.1.A1_at--364--3011Chr12:2995416..2995440 (25 bp)
AATCCGGTGCTGTCGCCACCGAAGG
LOC_Os12g06280
Os.22827.1.A1_at--675--3391Chr12:2995448..2995472 (25 bp)
CAGCGGCAGCGTTGGTGGGTCGTCG
LOC_Os12g06280
Os.22827.1.A1_at--1120--2591NONE
AACGCCCTGGATGGGCCAACAAACA
NONE
Target Sequence 
ACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGNNNNNNNNNNNNN
NNNNNCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGT
CGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGNCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGC
CATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTNCCTCGCCGTCGCCGNTCTGTCGCAGTGATCGATCGATCG
TGTNCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATNAGCTGCTTGTTTAATNTGNACCTATATATNN
TNCNNTNGCTGATCCCGANCGAGTTGNNGNNATTNCGNGAATNACNNNNTNNNNNNNNCNTNNNNANNANNNANNANNNA
NTNTNANNNNCCAGCGTTACACCGTTAACAAAAAACGCCCTGGATGGGCCAACAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22827.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis