Browse Element(s) Details


Os.48434.1.A1_at

Description gb:CR282763
DB_XREF= gi:44669329
DB_XREF=CR282763
CLONE=y709e04p3
TID=Os.48434.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48434 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48549 (A.thaliana) T48549 hypothetical protein F14F18.70 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g062702/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein
LOC_Os12g06290OsAffx.7500.1.S1_at10/1112+3006927..3008775hypothetical protein
LOC_Os12g06300Os.54296.1.S1_at9/1112+3012312..3014620hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48434.1.A1_at--486--2331NONE
AAAGAGTTTTCTACAGGAGCATCTG
NONE
Os.48434.1.A1_at--195--6751NONE
GTTAAGGCCGCCACTGAGAAGTAGC
NONE
Os.48434.1.A1_at--750--2911NONE
AAGGCCGCCACTGAGAAGTAGCAAA
NONE
Os.48434.1.A1_at--734--8411NONE
GGCCGCCACTGAGAAGTAGCAAATG
NONE
Os.48434.1.A1_at--739--4171NONE
CGCCACTGAGAAGTAGCAAATGGAT
NONE
Os.48434.1.A1_at--147--2391NONE
AAACTGTTTCTTTTCATTTCTGATC
NONE
Os.48434.1.A1_at--995--6831Chr12:2986235..2986255 (21 bp)
GTTTCTTTTCATTTCTGATCTTAAG
LOC_Os12g06270
Os.48434.1.A1_at--190--10571Chr12:2985891..2986254 (25 bp)
TTCTTTTCATTTCTGATCTTAAGTT
LOC_Os12g06270
Os.48434.1.A1_at--845--1351NONE
AGAGAAAGGTTGTTTCACACTGCAA
NONE
Os.48434.1.A1_at--478--5571NONE
GAAAGGTTGTTTCACACTGCAAGTT
NONE
Os.48434.1.A1_at--130--2911Chr01:5135217..5135240 (24 bp)
AAGGTTGTTTCACACTGCAAGTTTG
NONE
Target Sequence 
AAAGAGTTTTCTACAGGAGCATCTGTTGTTAAGGCCGCCACTGAGAAGTAGCAAATGGATGTGCAAGGGGATATATCATA
TGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTGAAGATGGAAGGAAGG
TTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGT
ATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCAAAGACNAAAAACTGTTTCTTTTCATT
TCTGATCTTAAGTTCATCACAACTGGTGTTATATCGACAACTGGTCCCATGTGTATCAACTTTATCCTGCAAGNTANTTT
GGTATTGCTAAGCCATTTGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAGAAGAGTG
CAAATTAGTAGTGTTTCTGCCCATTCTGCTTTCATAGAGAAAGGTTGTTTCACACTGCAAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48434.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis