Browse Element(s) Details


Os.54296.1.S1_at

Description gb:AK103168.1
DB_XREF= gi:32988377
TID=Os.54296.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121F11, full insert sequence.
FL= gb:AK103168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g063009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein
LOC_Os12g06290OsAffx.7500.1.S1_at10/1112+3006927..3008775hypothetical protein
LOC_Os12g06300Os.54296.1.S1_at9/1112+3012312..3014620hypothetical protein
LOC_Os12g06314NANA12+3020031..3020530NA
LOC_Os12g06330Os.48567.1.S1_at11/1112+3023062..3028392expressed protein
LOC_Os12g06340Os.27423.1.S1_x_at11/1112+3028600..3033637Associated with HOX family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54296.1.S1_at--198--6291Chr12:3014106..3014130 (25 bp)
GATGATTGGACTGACCCTGAAAAAT
LOC_Os12g06300
Os.54296.1.S1_at--178--5271Chr12:3014322..3014346 (25 bp)
GAATCCATCCTGGTCTCAGGTGAGT
LOC_Os12g06300
Os.54296.1.S1_at--925--7451Chr12:3014345..3014369 (25 bp)
GTGGGAAACATACACCATCCTGTTA
LOC_Os12g06300
Os.54296.1.S1_at--798--6371Chr12:3014444..3014468 (25 bp)
GATCCTGCAGAGTATTGTTCTCCTA
LOC_Os12g06300
Os.54296.1.S1_at--625--10231Chr12:3014456..3014480 (25 bp)
TATTGTTCTCCTAAGCAGTTCTGCC
LOC_Os12g06300
Os.54296.1.S1_at--409--1231Chr12:3014472..3014496 (25 bp)
AGTTCTGCCTTCAGTAATCTTCTGC
LOC_Os12g06300
Os.54296.1.S1_at--979--4711Chr12:3014509..3014533 (25 bp)
GCTGGAGCTCTGTGGATCAATCAAC
LOC_Os12g06300
Os.54296.1.S1_at--455--10011Chr12:3014544..3014568 (25 bp)
TAGCATTTCCTTTGAGGCCTGGGAT
LOC_Os12g06300
Os.54296.1.S1_at--375--3131Chr12:3014592..3014616 (25 bp)
AATTTAGCAAGCACAGACCTGGTAT
LOC_Os12g06300
Os.54296.1.S1_at--846--5811Chr12:3014607..3014631 (25 bp)
GACCTGGTATGTGATTTTATGCCTT
NONE
Os.54296.1.S1_at--42--6271Chr12:3014712..3014736 (25 bp)
GATGTGACTTTGGTTCCGTGATAAT
NONE
Target Sequence 
GATGATTGGACTGACCCTGAAAAATCAAAATTTGTTTGAGTTTTCAGCATCTATGGGAATAATTTTGCAACGATCTGAAG
ATAACTTGGTACAAGGTCAATTGAAGAAATGCATAACTTGCTATTGTTGCTGGAATCCATCCTGGTCTCAGGTGAGTGGG
AAACATACACCATCCTGTTATTCCTGGGGAGCGGAGTAATTTTCTGCAGTGTGAAGCTGACGGGTCAAGCGCAAACAAAA
ACAATGGGGTGATAGATCCTGCAGAGTATTGTTCTCCTAAGCAGTTCTGCCTTCAGTAATCTTCTGCTTTTATGTTTTTG
CTGGAGCTCTGTGGATCAATCAACAGGATGTTTGTAGCATTTCCTTTGAGGCCTGGGATCAATGGAATTGTCAACCAATA
TGAATTTAGCAAGCACAGACCTGGTATGTGATTTTATGCCTTTCGATTATTATCAGCAATGCAACACTAAGTTGTTTTTT
AGAATTTTCAATGCAACACTAAATTGTCTTGAAATATCAAAGGATGTGACTTTGGTTCCGTGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis