Browse Element(s) Details


Os.48567.1.S1_at

Description gb:AK074015.1
DB_XREF= gi:32984038
TID=Os.48567.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074F23, full insert sequence.
FL= gb:AK074015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0633011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06290OsAffx.7500.1.S1_at10/1112+3006927..3008775hypothetical protein
LOC_Os12g06300Os.54296.1.S1_at9/1112+3012312..3014620hypothetical protein
LOC_Os12g06314NANA12+3020031..3020530NA
LOC_Os12g06330Os.48567.1.S1_at11/1112+3023062..3028392expressed protein
LOC_Os12g06340Os.27423.1.S1_x_at11/1112+3028600..3033637Associated with HOX family protein, expressed
LOC_Os12g06350NANA12+3043007..3046097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06360OsAffx.20387.1.S1_x_at1/1112+3046350..3048728retrotransposon protein, putative, unclassified
LOC_Os12g06370OsAffx.17106.1.S1_x_at1/1112+3049788..3052848retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48567.1.S1_at--504--2451Chr12:3027751..3027775 (25 bp)
AAAATAAAATCTGGGCTCGCTTCAC
LOC_Os12g06330
Os.48567.1.S1_at--379--7571Chr12:3027763..3027783 (21 bp)
GGGCTCGCTTCACCGTTGAGGCCAA
LOC_Os12g06330
Os.48567.1.S1_at--801--4891Chr12:3027769..3027896 (25 bp)
GCTTCACCGTTGAGGCCAACAGGGA
LOC_Os12g06330
Os.48567.1.S1_at--291--6651Chr12:3027884..3027904 (21 bp)
GTTGAGGCCAACAGGGATGTGACTA
LOC_Os12g06330
Os.48567.1.S1_at--663--3271Chr12:3027888..3027912 (25 bp)
CAACAGGGATGTGACTAGAATGGAA
LOC_Os12g06330
Os.48567.1.S1_at--578--5291Chr12:3027905..3027929 (25 bp)
GAATGGAAATCTTCCTCTCGCTTAT
LOC_Os12g06330
Os.48567.1.S1_at--842--8511Chr12:3027908..3027932 (25 bp)
TGGAAATCTTCCTCTCGCTTATGCG
LOC_Os12g06330
Os.48567.1.S1_at--852--6591Chr12:3027936..3027960 (25 bp)
GTTGGAACCGAGCTGTGATGGCGGC
LOC_Os12g06330
Os.48567.1.S1_at--424--2511Chr12:3028070..3028094 (25 bp)
AACATTATCAGAGGCATCTGAATCT
LOC_Os12g06330
Os.48567.1.S1_at--130--9651Chr12:3028126..3028150 (25 bp)
TCAGTTCACTCTCCTGCCATGACTA
LOC_Os12g06330
Os.48567.1.S1_at--123--691Chr12:3028144..3028168 (25 bp)
ATGACTAGCATTGTCAGTGTGCACT
LOC_Os12g06330
Target Sequence 
AAAATAAAATCTGGGCTCGCTTCACCGTTGAGGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTCTCGCTTATGCGC
TTGTTGGAACCGAGCTGTGATGGCGGCGGAGGANGCGTNNGAGATAATCCTAACAATGTAANAATACCTCCTGGGATNGT
GCAACNTCCNGTNATACCANCAACAGGCCATCTTANGTGAGAAAACGAGTANGGGAAACATTATCAGAGGCATCTGAATC
TCTGAACTTCTGAAGTGCTAAGAGTGGGAGCTTCAGTTCACTCTCCTGCCATGACTAGCATTGTCAGTGTGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis