Browse Element(s) Details


Os.9526.1.S1_at

Description gb:AK061582.1
DB_XREF= gi:32971600
TID=Os.9526.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H12, full insert sequence.
FL= gb:AK061582.1 gb:AK070481.1 gb:AK104185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0626011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9526.1.S1_at--391--4411Chr12:2979013..2979037 (25 bp)
GCCACGTCGAGGTCTAGCTAAGCTA
LOC_Os12g06260
Os.9526.1.S1_at--1137--731Chr12:2978985..2979009 (25 bp)
ATGTTATGATCTACTACTGTGCCCA
LOC_Os12g06260
Os.9526.1.S1_at--227--8211Chr12:2978949..2978973 (25 bp)
GGAATCTGCTATCTCCGGCTAGTCG
LOC_Os12g06260
Os.9526.1.S1_at--407--4171Chr12:2978926..2978950 (25 bp)
CGCCGGCGAGGTAGGTTTGATTTCT
LOC_Os12g06260
Os.9526.1.S1_at--618--8791Chr12:2978889..2978913 (25 bp)
TGTTCTTGTGCGTCCATAGTGAAAA
LOC_Os12g06260
Os.9526.1.S1_at--614--7891Chr12:2978777..2978801 (25 bp)
GGTTAATTATAATGCTCTCTTGATT
LOC_Os12g06260
Os.9526.1.S1_at--43--3011Chr12:2978706..2978730 (25 bp)
AATGCATGTTTAGTTATTTGTCAAA
LOC_Os12g06260
Os.9526.1.S1_at--249--10371Chr12:2978648..2978672 (25 bp)
TTTTTTCATGTGGTCATGCATTTCT
LOC_Os12g06260
Os.9526.1.S1_at--903--7751Chr12:2978608..2978632 (25 bp)
GGTGATAGCTCATTTTGATCATGCA
LOC_Os12g06260
Os.9526.1.S1_at--167--2471Chr12:2978522..2978546 (25 bp)
AACAACCAGATCCAAGGCACCACTT
LOC_Os12g06260
Os.9526.1.S1_at--733--8251Chr12:2978507..2978531 (25 bp)
GGCACCACTTGAAATGTGAGATTTG
LOC_Os12g06260
Target Sequence 
GCCACGTCGAGGTCTAGCTAAGCTAGTTATGTTATGATCTACTACTGTGCCCACCGCCGCCGCCGGAATCTGCTATCTCC
GGCTAGTCGCCGGCGAGGTAGGTTTGATTTCTTGGAGGTGGTGGTGTTCTTGTGCGTCCATAGTGAAAAAGAGATGATGG
TGGTAATAATGAATTATNTATGTGGGTTACAAAATGTAAAGGAGGTGGAGAGGCAATTTAAGTAGGATTAATGGTATGGT
TAATTATAATGCTCTCTTGATTATTAGCTTAATTGTTAATAATCCTTTTTTTGTCTTAATTAAGGAGAAATGCATGTTTA
GTTATTTGTCAAATTCTGTATTTTTATTTTAATTCTACCTCTCTCNTTTTTTCATGTGGTCATGCATTTCTTTTTGGAGT
GATGTTGGTGATAGCTCATTTTGATCATGCAAATTAGGGGTGTTGGATCAACTGGCTTTTTTGGAATTATGTATGCATGT
TTGTTTGTTGGCAACAACCAGATCCAAGGCACCACTTGAAATGTGAGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis