Browse Element(s) Details


OsAffx.19535.1.S1_at

Description tigr:9640.m00691
TID=OsAffx.19535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0761011/11myb family transcription factor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07560NANA12+3776544..3777080hypothetical protein
LOC_Os12g07570OsAffx.19534.1.S1_at11/1112+3780628..3780907hypothetical protein
LOC_Os12g07580OsAffx.7517.1.S1_x_at11/1112+3788885..3789726Dirigent-like protein, expressed
LOC_Os12g07590Os.22971.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.55631.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.22971.2.S1_x_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07600NANA12+3797756..3798058hypothetical protein
LOC_Os12g07610OsAffx.19535.1.S1_at11/1112+3799030..3800862myb family transcription factor, putative
LOC_Os12g07620OsAffx.21870.2.S1_x_at4/1112+3821609..3823507hypothetical protein
LOC_Os12g07620OsAffx.21870.3.S1_x_at4/1112+3821609..3823507hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19535.1.S1_at--700--10011Chr12:3799520..3799544 (25 bp)
TAGCAAAATGCCTACCTGGAAGAAC
LOC_Os12g07610
OsAffx.19535.1.S1_at--113--2771Chr12:3799459..3799483 (25 bp)
AAGACGGCAATTTGCGCGACGGCGC
LOC_Os12g07610
OsAffx.19535.1.S1_at--444--1791Chr12:3799433..3799457 (25 bp)
ACCGTTCTACCTCCAAATCAGGAAG
LOC_Os12g07610
OsAffx.19535.1.S1_at--666--2431Chr12:3799386..3799410 (25 bp)
AAAAGTCTTGCCATTTCTCCACAAG
LOC_Os12g07610
OsAffx.19535.1.S1_at--1147--8891Chr12:3799345..3799369 (25 bp)
TGAGAGGTCAGAATCTAATCCATCT
LOC_Os12g07610
OsAffx.19535.1.S1_at--679--471Chr12:3799324..3799348 (25 bp)
ATCTGACATGATGATCACCCAAGGG
LOC_Os12g07610
OsAffx.19535.1.S1_at--239--2891Chr12:3799304..3799328 (25 bp)
AAGGGACACCCTGCTGCTTTGATGG
LOC_Os12g07610
OsAffx.19535.1.S1_at--104--71Chr12:3799274..3799298 (25 bp)
ATTGCAGCCAAAGTCACACTTCTGA
LOC_Os12g07610
OsAffx.19535.1.S1_at--917--1231Chr12:3799240..3799264 (25 bp)
AGTTCCTAGCTGTGGTGATTTTGCA
LOC_Os12g07610
OsAffx.19535.1.S1_at--218--5131Chr12:3799164..3799188 (25 bp)
GCACAATACCTGCTCTATGACATGG
LOC_Os12g07610
OsAffx.19535.1.S1_at--501--7051Chr12:3799091..3799115 (25 bp)
GTAACATTGAGCCTGGATTAGCATC
LOC_Os12g07610
Target Sequence 
TAGCAAAATGCCTACCTGGAAGAACTGAAAACTCCATCAAAAACCACTGGAATGCAACAAAAAGACGGCAATTTGCGCGA
CGGCGCAACCGTTCTACCTCCAAATCAGGAAGTACAGTTCTGCAAAACTACATCAAAAGTCTTGCCATTTCTCCACAAGA
ATCACAGATGAACAATGAGAGGTCAGAATCTAATCCATCTGACATGATGATCACCCAAGGGACACCCTGCTGCTTTGATG
GGAACAATTGCAGCCAAAGTCACACTTCTGAAGAGAATATAGTTCCTAGCTGTGGTGATTTTGCAGCTGAAATGTGGAGT
GGTTTGTTTGACACAAAGGAAGATGAGGAGGATGAAGCACAATACCTGCTCTATGACATGGACACTCATGTTGACATGAA
CTGTATTTTCAGCAATATGGATTATGGTAGTAACATTGAGCCTGGATTAGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis