Browse Element(s) Details


OsAffx.1958.1.S1_at

Description tigr:9629.m00761
TID=OsAffx.1958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0824011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08209NANA1+3998223..3998416NA
LOC_Os01g08220NANA1+4000461..4001748oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g08229NANA1+4004285..4004452NA
LOC_Os01g08240OsAffx.1958.1.S1_at11/111+4019948..4020244hypothetical protein
LOC_Os01g08250NANA1+4021657..4027391retrotransposon protein, putative, unclassified
LOC_Os01g08260Os.47982.1.A1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.1.A1_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.2.S1_x_at11/111+4030556..4034269ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1958.1.S1_at--1006--2971Chr01:4020190..4020214 (25 bp)
AATGACAACAACCTTAGGAGCGGCG
LOC_Os01g08240
OsAffx.1958.1.S1_at--49--2211Chr01:4020186..4020210 (25 bp)
ACAACAACCTTAGGAGCGGCGGCGG
LOC_Os01g08240
OsAffx.1958.1.S1_at--244--4711Chr01:4020165..4020189 (25 bp)
GCGGCCTTGGGAGCGCGCGATGGAT
LOC_Os01g08240
OsAffx.1958.1.S1_at--144--1291Chr01:4020114..4020138 (25 bp)
AGATCCCCAGCGTGCATGGGAGCGA
LOC_Os01g08240
OsAffx.1958.1.S1_at--393--5771Chr01:4020091..4020115 (25 bp)
GACGTTGATGATGACCGCGCTAGCC
LOC_Os01g08240
OsAffx.1958.1.S1_at--1038--4031Chr01:4020089..4020113 (25 bp)
CGTTGATGATGACCGCGCTAGCCTT
LOC_Os01g08240
OsAffx.1958.1.S1_at--286--1331Chr01:4020061..4020085 (25 bp)
AGAGGCATATCCAACGACGGGAGTC
LOC_Os01g08240
OsAffx.1958.1.S1_at--563--4951Chr01:4020057..4020081 (25 bp)
GCATATCCAACGACGGGAGTCCAGG
LOC_Os01g08240
OsAffx.1958.1.S1_at--190--3991Chr01:4020044..4020068 (25 bp)
CGGGAGTCCAGGGATGGCATCAACA
LOC_Os01g08240
OsAffx.1958.1.S1_at--596--4951Chr01:4020028..4020052 (25 bp)
GCATCAACAAAGTCGGTGGCGGCCA
LOC_Os01g08240
OsAffx.1958.1.S1_at--275--3271Chr01:4020024..4020048 (25 bp)
CAACAAAGTCGGTGGCGGCCATTAT
LOC_Os01g08240
Target Sequence 
AATGACAACAACCTTAGGAGCGGCGGCGGCCTTGGGAGCGCGCGATGGATCCATCGCCACTGGCCTCGGTTGGGGCAGAT
CCCCAGCGTGCATGGGAGCGACGTTGATGATGACCGCGCTAGCCTTGGGAGAGGCATATCCAACGACGGGAGTCCAGGGA
TGGCATCAACAAAGTCGGTGGCGGCCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis