Browse Element(s) Details


Os.47982.2.S1_x_at

Description gb:AK061474.1
DB_XREF= gi:32971492
TID=Os.47982.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F02, full insert sequence.
FL= gb:AK061474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0826011/11ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08240OsAffx.1958.1.S1_at11/111+4019948..4020244hypothetical protein
LOC_Os01g08250NANA1+4021657..4027391retrotransposon protein, putative, unclassified
LOC_Os01g08260Os.47982.1.A1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.1.A1_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.2.S1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47982.2.S1_x_at--117--7352Chr02:32179617..32180016 (25 bp)
GTGAAGTTCTTGTGGTACCTGTTCT
NONE
Os.47982.2.S1_x_at--784--4731Chr01:4031911..4031935 (25 bp)
GCTGTACTTCACTTTCTATGGCATG
LOC_Os01g08260
Os.47982.2.S1_x_at--479--2651Chr01:4031865..4031889 (25 bp)
AACCACACTGTTGCGCCTATTATTG
LOC_Os01g08260
Os.47982.2.S1_x_at--418--10211Chr01:4031848..4031872 (25 bp)
TATTATTGCTGCTCCATTCTACACG
LOC_Os01g08260
Os.47982.2.S1_x_at--761--111Chr01:4031833..4031857 (25 bp)
ATTCTACACGCTGTGGAATCTCTTC
LOC_Os01g08260
Os.47982.2.S1_x_at--681--5251Chr01:4031818..4031842 (25 bp)
GAATCTCTTCTGTGGGTTCATGATC
LOC_Os01g08260
Os.47982.2.S1_x_at--740--6871Chr01:4031104..4031128 (25 bp)
GTATTACTGGGCCAACCCGGTGTCA
LOC_Os01g08260
Os.47982.2.S1_x_at--193--5771Chr01:4030818..4030842 (25 bp)
GACGTACACCACCATTAATTCTCTG
LOC_Os01g08260
Os.47982.2.S1_x_at--214--9751Chr01:4030803..4030827 (25 bp)
TAATTCTCTGGCCAGCTATAGCGCT
LOC_Os01g08260
Os.47982.2.S1_x_at--989--9991Chr01:4030785..4030809 (25 bp)
TAGCGCTCAAATGTGTACTGCAACT
LOC_Os01g08260
Os.47982.2.S1_x_at--116--4971Chr01:4030751..4030775 (25 bp)
GCATCAATCCATTTCGTTTCTTCAG
LOC_Os01g08260
Target Sequence 
GTGAAGTTCTTGTGGTACCTGTTCTTCATGTACTTCACCTTGCTGTACTTCACTTTCTATGGCATGATGACAACGGCGAT
CACTCCCAACCACACTGTTGCGCCTATTATTGCTGCTCCATTCTACACGCTGTGGAATCTCTTCTGTGGGTTCATGATCC
CAAGAAAGAGGATTCCTGCGTGGTGGAGGTGGTATTACTGGGCCAACCCGGTGTCATGGACCCTGTACGGCCTGCTAACC
TCCCAGTTCGGCGACCTGGATCAGCCGCTGCTGCTCGCCGACGGCATCACCACCACCACCGCCGTCGACTTCCTCCGGGA
CCACTTCGGCTTCCGCCACGACTTCCTCGGCGTCGTCGCCGGCATGGTCGCCGGCTTCTGCGTGCTCTTCGCCGTCGTCT
TCGCCCTGGCCATCAAGTACCTCAACTTCCAGAGAAGATGAGACGACGACGAGCGAGAAGCGAGCTATAGGGAGCACGAC
GTACACCACCATTAATTCTCTGGCCAGCTATAGCGCTCAAATGTGTACTGCAACTACTATGCATGCATCAATCCATTTCG
TTTCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47982.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis