Browse Element(s) Details


Os.50272.1.S1_s_at

Description gb:AK120458.1
DB_XREF= gi:37990081
TID=Os.50272.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105O22, full insert sequence.
FL= gb:AK120458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0827011/11aminotransferase class I and II family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08250NANA1+4021657..4027391retrotransposon protein, putative, unclassified
LOC_Os01g08260Os.47982.1.A1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.1.A1_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.2.S1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein
LOC_Os01g08290Os.25067.2.S1_at7/111+4060870..4063121integral membrane family protein, putative, expressed
LOC_Os01g08300OsAffx.23160.1.S1_s_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.51295.1.S1_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.46584.1.S1_x_at1/111+4063149..4064121expressed protein
LOC_Os01g08310Os.55822.1.A1_at10/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.1.S1_x_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.2.S1_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320Os.9069.1.S1_at11/111+4070718..4073240Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009611biological_processresponse to wounding
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0004069molecular_functionaspartate transaminase activity
GO:0004838molecular_functiontyrosine transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50272.1.S1_s_at--63--1071Chr01:4049267..4049291 (25 bp)
AGGGTGCCATTTACCTCTGGGCAAA
LOC_Os01g08270
Os.50272.1.S1_s_at--939--8791Chr01:4049257..4049281 (25 bp)
TTACCTCTGGGCAAAACTACCCGAG
LOC_Os01g08270
Os.50272.1.S1_s_at--351--6491Chr01:4049144..4049168 (25 bp)
GATATATCCGGGTTTCTTTCGGAGG
LOC_Os01g08270
Os.50272.1.S1_s_at--355--2731Chr01:4049114..4049138 (25 bp)
AAGAATCGGATACAAGGCTTGCTGC
LOC_Os01g08270
Os.50272.1.S1_s_at--789--9771Chr01:4049081..4049105 (25 bp)
TAAGGCGCGGCTTGCAAGAACTTGT
LOC_Os01g08270
Os.50272.1.S1_s_at--1074--7831Chr01:4049044..4049068 (25 bp)
GGTACAGTGACAGCCCAATGGATGC
LOC_Os01g08270
Os.50272.1.S1_s_at--885--7091Chr01:4048870..4048894 (25 bp)
GTCACATTGGATTTCCTAGTGGAAA
LOC_Os01g08270
Os.50272.1.S1_s_at--731--2411Chr01:4048816..4048840 (25 bp)
AAAAAAGACTCATCCACCCTGTGGA
LOC_Os01g08270
Os.50272.1.S1_s_at--248--3351Chr01:4048802..4048826 (25 bp)
CACCCTGTGGAATACCATTGTCATT
LOC_Os01g08270
Os.50272.1.S1_s_at--713--8811Chr01:4048750..4048774 (25 bp)
TGTTGCTTGATAACCTCTTTCCCTA
LOC_Os01g08270
Os.50272.1.S1_s_at--443--10651Chr01:4048732..4048756 (25 bp)
TTCCCTACAATCAGGACAGCAGCTG
LOC_Os01g08270
Target Sequence 
AGGGTGCCATTTACCTCTGGGCAAAACTACCCGAGAAATGCTCAGATGATTTTGAAGTTGTCAGATGGCTTGCAAACAAG
CATGGTGTGGCTGNGATCCCCGGGAGCGCCAGTGGAGGTCCCNGGATATATCCGGGTTTCTTTCGGAGGGTTGAAAGAAT
CGGATACAAGGCTTGCTGCTGAGAGGTTAAGGCGCGGCTTGCAAGAACTTGTGACTGAGGGAATGGTACAGTGACAGCCC
AATGGATGCAAGAAATACATGACATACAAATCACAAAAGTGAAAATTTTCAGTTACATAATAATTCTGGGATTAGTTCAA
GAGAAGAAAAGAGCCAAAATTTCAAGATTACAACATGGTTGTTAGAAAATGCTGAAGCTTTTATTTCAGAGAACTTTTGT
CACATTGGATTTCCTAGTGGAAATTTGATTTGGTGGGTTGAGTAGAGGGAAAAAAAAAGACTCATCCACCCTGTGGAATA
CCATTGTCATTAAAGGGGTATTCATGTTTAGTACTTACTGTTGCTTGATAACCTCTTTCCCTACAATCAGGACAGCAGCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50272.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis