Browse Element(s) Details


Os.25067.2.S1_at

Description gb:NM_189524.1
DB_XREF= gi:34906131
GEN=P0509B06.3
TID=Os.25067.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0509B06.3 (P0509B06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0509B06.3 (P0509B06.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g082907/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein
LOC_Os01g08290Os.25067.2.S1_at7/111+4060870..4063121integral membrane family protein, putative, expressed
LOC_Os01g08300OsAffx.23160.1.S1_s_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.51295.1.S1_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.46584.1.S1_x_at1/111+4063149..4064121expressed protein
LOC_Os01g08310Os.55822.1.A1_at10/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.1.S1_x_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.2.S1_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320Os.9069.1.S1_at11/111+4070718..4073240Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25067.2.S1_at--428--7931Chr01:4062391..4062415 (25 bp)
GGATTCTCGATTGGGCTTACATTTG
LOC_Os01g08290
Os.25067.2.S1_at--218--10091Chr01:4062422..4062446 (25 bp)
TAGGATTCTTAACCACTCAGTGTTC
LOC_Os01g08290
Os.25067.2.S1_at--1065--8571Chr01:4062473..4062497 (25 bp)
TGGTTATACCCTTAGCTACAGCAGC
LOC_Os01g08290
Os.25067.2.S1_at--1118--1611Chr01:4062495..4062519 (25 bp)
AGCTGGCCTATGTGGAAGTCTGATC
LOC_Os01g08290
Os.25067.2.S1_at--989--7771Chr01:4062700..4062724 (25 bp)
GGTCCGACGGTCACCAGGATTTCAG
LOC_Os01g08290
Os.25067.2.S1_at--100--6851Chr01:4062760..4062784 (25 bp)
GTTTCTGTGTTCTTGACTACTCTGA
LOC_Os01g08290
Os.25067.2.S1_at--86--2031Chr01:4062775..4062798 (24 bp)
ACTACTCTGATCACTGCATTGGCGA
LOC_Os01g08290
Os.25067.2.S1_at--185--3411Chr01:4063432..4063456 (25 bp)
CAGCAGAGGCATTCGAGGCAGCACT
NONE
Os.25067.2.S1_at--615--1993Chr06:2260945..2260969 (25 bp)
ACTCGCAGGTCTCGTAGCAGCAGAA
NONE
Os.25067.2.S1_at--1026--271Chr01:4063940..4063964 (25 bp)
ATAGAGGCAGCCTTTGTCCTCATGG
NONE
Os.25067.2.S1_at--171--871Chr01:4063961..4063985 (25 bp)
ATGGCGCTTCTTGACATGGTCGGAG
NONE
Target Sequence 
GGATTCTCGATTGGGCTTACATTTGTGCTACTAGGATTCTTAACCACTCAGTGTTCTTCTGATGTATTCTGGAGGCAGCT
GCTGGTTATACCCTTAGCTACAGCAGCTGGCCTATGTGGAAGTCTGATCGATTCGTTGCTGGGCGCAACACTCCAGTACA
GTGGGTACTGTAGTCTTCGTAAAAAGGTGGTTGGAGTAGACGGTCCGACGGTCACCAGGATTTCAGGACGGAATATACTG
GACAACAATGGTGTCAATGTAGTTTCTGTGTTCTTGACTACTCTGATCACTGCATTGGCGAGATCAGCAGCAGCAGAGGC
ATTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCAGCAGAGGGTGAACAGGCTGCAACAAAAAGGGAAAGAG
ATCACAGATTAGAAGAGCATGACAGAAGAAGAGGATCACCATGCATAGAGGCAGCCTTTGTCCTCATGGCGCTTCTTGAC
ATGGTCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25067.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis