Browse Element(s) Details


OsAffx.10962.1.S1_x_at

Description gb:NM_189525.1
DB_XREF= gi:34906133
GEN=P0509B06.4
TID=OsAffx.10962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Arabidopsis thaliana B regulatory subunit of PP2A like protein (P0509B06.4), mRNA.
PROD=Arabidopsis thaliana B regulatory subunit ofPP2A like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g083107/11Protein phosphatase 2A regulatory B subunit containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein
LOC_Os01g08290Os.25067.2.S1_at7/111+4060870..4063121integral membrane family protein, putative, expressed
LOC_Os01g08300OsAffx.23160.1.S1_s_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.51295.1.S1_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.46584.1.S1_x_at1/111+4063149..4064121expressed protein
LOC_Os01g08310Os.55822.1.A1_at10/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.1.S1_x_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.2.S1_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320Os.9069.1.S1_at11/111+4070718..4073240Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10962.1.S1_x_at--432--351Chr01:4067208..4067232 (25 bp)
ATAAGCGGGTTTGCGAAGCCATTGA
NONE
OsAffx.10962.1.S1_x_at--1068--5551Chr01:4067158..4067182 (25 bp)
GAAAGCGTTGATCCCGCTTCACAAG
NONE
OsAffx.10962.1.S1_x_at--634--8631Chr01:4067123..4067147 (25 bp)
TGGGTGTGTATCTTCCGCAGCTGAC
NONE
OsAffx.10962.1.S1_x_at--681--1231Chr01:4066964..4066988 (25 bp)
AGTTGACCGACATGGCTGAGTTTCA
LOC_Os01g08310
OsAffx.10962.1.S1_x_at--689--1411NONE
AGAAATGCATGGTGATCCTACCGAT
NONE
OsAffx.10962.1.S1_x_at--1142--3711Chr01:4065952..4065976 (25 bp)
CTACCGATCATATATCCAGCTCTGG
LOC_Os01g08310
OsAffx.10962.1.S1_x_at--671--6191Chr01:4065926..4065950 (25 bp)
GAGGAACACCCGTTGGCACTGGAAT
LOC_Os01g08310
OsAffx.10962.1.S1_x_at--1067--5091Chr01:4065911..4065935 (25 bp)
GCACTGGAATCAGTCGGTCCTCAAT
LOC_Os01g08310
OsAffx.10962.1.S1_x_at--542--7771Chr01:4065896..4065920 (25 bp)
GGTCCTCAATGTTACCCTGAATGTC
LOC_Os01g08310
OsAffx.10962.1.S1_x_at--189--851Chr01:4065853..4065877 (25 bp)
ATGGACGAGAGATTGCTCCTGGCCT
LOC_Os01g08310
OsAffx.10962.1.S1_x_at--96--8851Chr01:4065714..4065738 (25 bp)
TGATCACCACTACTGACTCAAGCTT
LOC_Os01g08310
Target Sequence 
ATAAGCGGGTTTGCGAAGCCATTGAAGGAAGAGCACAAGTTGTTCCTATGGAAAGCGTTGATCCCGCTTCACAAGCCAAA
GACGGTGGGTGTGTATCTTCCGCAGCTGACGTACTGCATCACACAGTTCATCGAGAAGGAAACCAAGCTTGCAGGGACTG
TAATCAGAGGCCTGCTGAAGTACTGGCCAGTTACAAACAGTCAGAAGGAGATGATGTTCTTGGGGGAGTTGGAGGAGGTG
CTCGAGTTGACCGACATGGCTGAGTTTCAGAAATGCATGGTGATCCTACCGATCATATATCCAGCTCTGGAGAGGAACAC
CCGTTGGCACTGGAATCAGTCGGTCCTCAATGTTACCCTGAATGTCAAGAAAATGTTCTTGGACATGGACGAGAGATTGC
TCCTGGCCTGCCAGAACAACTTCCAAGCGGAAGAAGAGAAGCGAGCCGCGACCGAGGAGCGGCGAAGGCTGATGTGGGAG
CAGCTGGAGCGGAATGCCGCTGCGGCATGCCATCCACATCCAGTGATCACCACTACTGACTCAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10962.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis