Browse Element(s) Details


Os.25067.1.S1_a_at

Description gb:AK122048.1
DB_XREF= gi:37991694
TID=Os.25067.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0509B06.3 (P0509B06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114C24, full insert sequence.
FL= gb:AK122048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08260Os.47982.1.A1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.1.A1_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08260Os.47982.2.S1_x_at11/111+4030556..4034269ABC transporter, putative, expressed
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein
LOC_Os01g08290Os.25067.2.S1_at7/111+4060870..4063121integral membrane family protein, putative, expressed
LOC_Os01g08300OsAffx.23160.1.S1_s_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.51295.1.S1_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.46584.1.S1_x_at1/111+4063149..4064121expressed protein
LOC_Os01g08310Os.55822.1.A1_at10/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.1.S1_x_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.2.S1_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320Os.9069.1.S1_at11/111+4070718..4073240Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25067.1.S1_a_at--131--10211Chr01:4059292..4059316 (25 bp)
TATTTACCCTCGATGAATGGGAGAA
LOC_Os01g08280
Os.25067.1.S1_a_at--1043--4571Chr01:4059317..4059341 (25 bp)
GCGAAAATCCGCTGGTTTGAAGTCC
LOC_Os01g08280
Os.25067.1.S1_a_at--1033--2251Chr01:4059321..4059345 (25 bp)
AAATCCGCTGGTTTGAAGTCCACAG
LOC_Os01g08280
Os.25067.1.S1_a_at--131--4731Chr01:4059327..4059351 (25 bp)
GCTGGTTTGAAGTCCACAGCACAAA
LOC_Os01g08280
Os.25067.1.S1_a_at--31--8991Chr01:4059334..4059358 (25 bp)
TGAAGTCCACAGCACAAAGCTACAT
LOC_Os01g08280
Os.25067.1.S1_a_at--521--5111Chr01:4059345..4059369 (25 bp)
GCACAAAGCTACATCGACGATACCA
LOC_Os01g08280
Os.25067.1.S1_a_at--830--2091Chr01:4059355..4059379 (25 bp)
ACATCGACGATACCAGCCGAGACGA
LOC_Os01g08280
Os.25067.1.S1_a_at--466--1591Chr01:4059394..4059418 (25 bp)
AGCTCCAGGAGCAACTAGATCTTGA
LOC_Os01g08280
Os.25067.1.S1_a_at--412--5151Chr01:4059404..4059428 (25 bp)
GCAACTAGATCTTGAAGACTCCTAT
LOC_Os01g08280
Os.25067.1.S1_a_at--875--151Chr01:4059684..4059708 (25 bp)
ATTTTAGCCCAATCCAAACATCCAA
LOC_Os01g08280
Os.25067.1.S1_a_at--429--9211Chr01:4059696..4059720 (25 bp)
TCCAAACATCCAATGGCAGTGGCAA
LOC_Os01g08280
Target Sequence 
TATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGC
CGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGC
AGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAG
GACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGG
CAGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25067.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis