Browse Element(s) Details


OsAffx.19632.1.S1_at

Description tigr:9640.m01210
TID=OsAffx.19632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1259011/11NADP-dependent oxidoreductase P1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12550OsAffx.19631.1.S1_at11/1112+6908509..6908939hypothetical protein
LOC_Os12g12560Os.53004.1.S1_at11/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12560OsAffx.29832.2.S1_at1/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12570OsAffx.7567.1.S1_at11/1112+6913838..6914215hypothetical protein
LOC_Os12g12580Os.34373.1.S1_at11/1112+6915075..6917439NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12590OsAffx.19632.1.S1_at11/1112+6931547..6935835NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12600OsAffx.19633.1.S1_at11/1112+6944098..6946847expressed protein
LOC_Os12g12610NANA12+6949934..6950399hypothetical protein
LOC_Os12g12620NANA12+6955174..6956448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12630OsAffx.18440.1.S1_at1/1112+6956627..6958063hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19632.1.S1_at--421--1911Chr12:6931598..6931622 (25 bp)
ACGGGACTTGTCTCGGAGGACGACA
LOC_Os12g12590
OsAffx.19632.1.S1_at--1020--3991Chr12:6931657..6931681 (25 bp)
CGTGCCGGCAGGGTCGAAGACGGTG
LOC_Os12g12590
OsAffx.19632.1.S1_at--912--7731Chr12:6931681..6931705 (25 bp)
GGTGGTCAAGAACCTGTATATCTCA
LOC_Os12g12590
OsAffx.19632.1.S1_at--1151--1431Chr12:6931689..6931713 (25 bp)
AGAACCTGTATATCTCATGCGACCC
LOC_Os12g12590
OsAffx.19632.1.S1_at--572--8771Chr12:6931695..6931719 (25 bp)
TGTATATCTCATGCGACCCCTACAT
LOC_Os12g12590
OsAffx.19632.1.S1_at--846--5671Chr12:6931709..6931733 (25 bp)
GACCCCTACATGCGTAACCGGATGA
LOC_Os12g12590
OsAffx.19632.1.S1_at--441--11Chr12:6931718..6931742 (25 bp)
ATGCGTAACCGGATGACCTACCACG
LOC_Os12g12590
OsAffx.19632.1.S1_at--46--7051Chr12:6931722..6931746 (25 bp)
GTAACCGGATGACCTACCACGAGGA
LOC_Os12g12590
OsAffx.19632.1.S1_at--36--7991Chr12:6931728..6931752 (25 bp)
GGATGACCTACCACGAGGAGCCTAG
LOC_Os12g12590
OsAffx.19632.1.S1_at--138--3711Chr12:6931735..6931759 (25 bp)
CTACCACGAGGAGCCTAGCTATGTT
LOC_Os12g12590
OsAffx.19632.1.S1_at--73--4371Chr12:6931738..6931762 (25 bp)
CCACGAGGAGCCTAGCTATGTTCCG
LOC_Os12g12590
Target Sequence 
ACGGGACTTGTCTCGGAGGACGACATGGAGGTGGTGACGGTGGAGGCACCGCCGCTGGCCGTGCCGGCAGGGTCGAAGAC
GGTGGTGGTCAAGAACCTGTATATCTCATGCGACCCCTACATGCGTAACCGGATGACCTACCACGAGGAGCCTAGCTATG
TTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis