Browse Element(s) Details


OsAffx.19633.1.S1_at

Description tigr:9640.m01212
TID=OsAffx.19633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to jasmonate-induced protein homolog - wheat (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1260011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12590OsAffx.19632.1.S1_at11/1112+6931547..6935835NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12600OsAffx.19633.1.S1_at11/1112+6944098..6946847expressed protein
LOC_Os12g12610NANA12+6949934..6950399hypothetical protein
LOC_Os12g12620NANA12+6955174..6956448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12630OsAffx.18440.1.S1_at1/1112+6956627..6958063hypothetical protein
LOC_Os12g12640OsAffx.19634.1.S1_at10/1112+6964506..6966110hypothetical protein
LOC_Os12g12640OsAffx.20040.1.S1_x_at1/1112+6964506..6966110hypothetical protein
LOC_Os12g12650Os.46184.1.A1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12650OsAffx.12703.1.S1_at1/1112+6970547..6976644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19633.1.S1_at--718--1071Chr12:6944209..6944233 (25 bp)
AGGGCAGGGAGTTCAACTTCTCCAA
LOC_Os12g12600
OsAffx.19633.1.S1_at--146--3771Chr12:6944241..6944265 (25 bp)
CTCTACCACATCTACAATAGCTCGG
LOC_Os12g12600
OsAffx.19633.1.S1_at--345--9591Chr12:6944284..6944308 (25 bp)
TCATAGACAACGTTTCTTCCACTGC
LOC_Os12g12600
OsAffx.19633.1.S1_at--350--811Chr12:6944310..6944334 (25 bp)
ATGGGTGGGCTGACCGTCAACAATT
LOC_Os12g12600
OsAffx.19633.1.S1_at--456--611Chr12:6944362..6944386 (25 bp)
ATGCGACGCTTGTTGCCCGAGGGCA
LOC_Os12g12600
OsAffx.19633.1.S1_at--572--1091Chr12:6944386..6944410 (25 bp)
AGGGCCTGCATACCTACGCTGGCAA
LOC_Os12g12600
OsAffx.19633.1.S1_at--933--4711Chr12:6944403..6944427 (25 bp)
GCTGGCAACTGGCATTGCTCCTTCA
LOC_Os12g12600
OsAffx.19633.1.S1_at--233--4311Chr12:6944422..6944446 (25 bp)
CCTTCACCTTGGTTTTCGAGGATGA
LOC_Os12g12600
OsAffx.19633.1.S1_at--1153--6791Chr12:6946591..6946615 (25 bp)
GTTTAACGGATCCACCCTTGAGGTG
LOC_Os12g12600
OsAffx.19633.1.S1_at--1029--1351Chr12:6946630..6946654 (25 bp)
AGAGACTCATGACTGGGCTATTGTT
LOC_Os12g12600
OsAffx.19633.1.S1_at--960--891Chr12:6946663..6946687 (25 bp)
AGGCGAGTTCGCTATGGCATCTGGT
LOC_Os12g12600
Target Sequence 
AGGGCAGGGAGTTCAACTTCTCCAACCTCTACCTCTACCACATCTACAATAGCTCGGAACCGAACCAGCAGCAGATCATA
GACAACGTTTCTTCCACTGCCATGGGTGGGCTGACCGTCAACAATTGGACGGTGTACGATGGAGTTGCGAGCGATGCGAC
GCTTGTTGCCCGAGGGCAGGGCCTGCATACCTACGCTGGCAACTGGCATTGCTCCTTCACCTTGGTTTTCGAGGATGAAA
GGTTTAACGGATCCACCCTTGAGGTGAAGGGGATATTTGAAGAGACTCATGACTGGGCTATTGTTGGGGGAACAGGCGAG
TTCGCTATGGCATCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis