Browse Element(s) Details


OsAffx.19804.1.S1_at

Description tigr:9640.m02341
TID=OsAffx.19804.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g245805/11negatively light-regulated protein, putative, expressed
LOC_Os03g412291/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24550Os.24564.1.A1_at11/1112+14024035..14034693Protein kinase domain containing protein, expressed
LOC_Os12g24580OsAffx.19804.1.S1_at5/1112+14051620..14054147negatively light-regulated protein, putative, expressed
LOC_Os12g24590NANA12+14062582..14062829hypothetical protein
LOC_Os12g24600Os.46012.2.S1_x_at7/1112+14069453..14074754retrotransposon protein, putative, unclassified
LOC_Os12g24600Os.46012.3.S1_x_at6/1112+14069453..14074754retrotransposon protein, putative, unclassified
LOC_Os12g24600Os.27088.1.A1_x_at3/1112+14069453..14074754retrotransposon protein, putative, unclassified
LOC_Os12g24610NANA12+14076618..14082239retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19804.1.S1_at--108--791NONE
ATGGAAAAACAGACCTATGCTCAAA
NONE
OsAffx.19804.1.S1_at--809--5831Chr12:14053408..14053432 (25 bp)
GACCTATGCTCAAAACAAGTATGGA
LOC_Os12g24580
OsAffx.19804.1.S1_at--512--8551Chr12:14053429..14053453 (25 bp)
TGGAGGAATTACACCCAAGAAGCCT
LOC_Os12g24580
OsAffx.19804.1.S1_at--525--2731Chr12:14053887..14053910 (24 bp)
AAGCAAGCTGCAAACGGCAGCGCAA
LOC_Os12g24580
OsAffx.19804.1.S1_at--314--4591Chr12:14053905..14053929 (25 bp)
GCGCAAGGGCAGCAATTGAGTCCTT
LOC_Os12g24580
OsAffx.19804.1.S1_at--439--10771Chr12:14053920..14053944 (25 bp)
TTGAGTCCTTGAAGCCAAAGCTAAA
LOC_Os12g24580
OsAffx.19804.1.S1_at--43--4851Chr12:14053939..14054422 (25 bp)
GCTAAAGGTGAAGCTGGAGTGCTCC
NONE
OsAffx.19804.1.S1_at--1004--7991Chr12:14054413..14054437 (25 bp)
GGAGTGCTCCCTGGCTAGCAAGTCA
NONE
OsAffx.19804.1.S1_at--726--9091Chr12:14054417..14054441 (25 bp)
TGCTCCCTGGCTAGCAAGTCACAGG
NONE
OsAffx.19804.1.S1_at--1095--2351Chr12:14054506..14054530 (25 bp)
AAAGCCAGGATTGAACTCTGCAAAT
NONE
OsAffx.19804.1.S1_at--127--6632Chr12:14054588..14054612 (25 bp)
GTTGTTTGGTTGCAAGTATTTTCTT
NONE
Target Sequence
ATGGAAAAACAGACCTATGCTCAAAACAAGTATGGAGGAATTACACCCAAGAAGCCTCTGATTTCAAAGGACCCTGAGCG
CGCCTACTTCGATTCCGCAGACTGGGTCCTAGGCAAGCAAGCTGCAAACGGCAGCGCAAGGGCAGCAATTGAGTCCTTGA
AGCCAAAGCTAAAGGTGAAGCTGGAGTGCTCCCTGGCTAGCAAGTCACAGGGGATCGAAGATGGGAATAGCAATTTAAAA
TTAGCTGGTTAATTAATTACATACGTTAGGAAAGAAAAGCCAGGATTGAACTCTGCAAATTGGATTCTTGATTCTTGGAG
GAGCCTAAGCTAATTGCTTGCTATGATCAAGTTAGATGTTGTTTGGTTGCAAGTATTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis