Browse Element(s) Details


OsAffx.19889.1.S1_at

Description tigr:9640.m02879
TID=OsAffx.19889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29810OsAffx.11342.1.S1_at4/1112+17788859..17791561transposon protein, putative, Mutator sub-class
LOC_Os12g29820OsAffx.31935.1.S1_at11/1112+17793129..17795379hypothetical protein
LOC_Os12g29830OsAffx.31936.1.S1_at9/1112+17796489..17799486hypothetical protein
LOC_Os12g29840OsAffx.19889.1.S1_at11/1112+17812539..17813671hypothetical protein
LOC_Os12g29850NANA12+17817886..17823808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29860NANA12+17826366..17833637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29874OsAffx.25805.1.S1_at8/1112+17835589..17837749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29874OsAffx.25805.1.S1_x_at6/1112+17835589..17837749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29874Os.47463.1.S1_x_at1/1112+17835589..17837749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29874Os.14491.2.S1_x_at1/1112+17835589..17837749transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19889.1.S1_at--398--5532Chr12:17812921..17812945 (25 bp)
GAAAAACTGCAATTTGTTGGCCATG
LOC_Os12g29840
OsAffx.19889.1.S1_at--672--6612Chr12:17812936..17813057 (25 bp)
GTTGGCCATGTTCACATACACTTGT
LOC_Os12g29840
OsAffx.19889.1.S1_at--1019--3611Chr12:17813053..17813077 (25 bp)
CTTGTACTCAAATTCGTGGCGTTCC
LOC_Os12g29840
OsAffx.19889.1.S1_at--942--6271Chr12:17813137..17813159 (23 bp)
GATGTATAGTAGCTTCGCTCCAGAT
LOC_Os12g29840
OsAffx.19889.1.S1_at--882--4911Chr12:17813148..17813354 (25 bp)
GCTTCGCTCCAGATAGTGAGGCTGT
LOC_Os12g29840
OsAffx.19889.1.S1_at--284--5351Chr12:17813358..17813382 (25 bp)
GAACCATCCTTCAGTAAAGGCCCCT
LOC_Os12g29840
OsAffx.19889.1.S1_at--727--8111Chr12:17813385..17813409 (25 bp)
GGACGAGCACCCTACTTGGCTAAAG
LOC_Os12g29840
OsAffx.19889.1.S1_at--870--10691Chr12:17813400..17813424 (25 bp)
TTGGCTAAAGCCTTCACGACAGAGG
LOC_Os12g29840
OsAffx.19889.1.S1_at--1073--8131Chr12:17813471..17813495 (25 bp)
GGACAAGTGCTATGCATTTCTCCAT
LOC_Os12g29840
OsAffx.19889.1.S1_at--362--3451Chr12:17813571..17813595 (25 bp)
CAGTGCCTCAGGGAAATGCTCTTAC
LOC_Os12g29840
OsAffx.19889.1.S1_at--171--4791Chr12:17813588..17813612 (25 bp)
GCTCTTACATACTTGTTTGGGTTCC
LOC_Os12g29840
Target Sequence 
GAAAAACTGCAATTTGTTGGCCATGTTCACATACACTTGTACTCAAATTCGTGGCGTTCCAAGGTTAAAGGTGTTGATCA
GTGGTCGTATCATGAGGTCGAGATACATGTAGTTATTGCGATGTATAGTAGCTTCGCTCCAGATAGTGAGGCTGTGGGGA
ACCATCCTTCAGTAAAGGCCCCTGGGGACGAGCACCCTACTTGGCTAAAGCCTTCACGACAGAGGCTGGGACAAGTGCTA
TGCATTTCTCCATTCTCAAATTTACATAAATTCACCGCTGAATGGAATTTAAGTACCGAGTTCATAAAAATACTGGTTTG
GGTTGATGCAGTGCCTCAGGGAAATGCTCTTACATACTTGTTTGGGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis