Browse Element(s) Details


OsAffx.20023.1.S1_at

Description tigr:9640.m03818
TID=OsAffx.20023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=12385-14737
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3917010/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39160Os.49678.1.S1_at11/1112+24053641..24056428Lipase, putative, expressed
LOC_Os12g39170OsAffx.20023.1.S1_at10/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39170Os.20341.1.S1_s_at1/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39180Os.19075.1.S1_at10/1112+24086315..24090178Metal transporter Nramp2, putative, expressed
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20023.1.S1_at--259--6031Chr12:24077445..24077469 (25 bp)
GAGAGGATTATAGCAACCCCAAGAA
LOC_Os12g39170
OsAffx.20023.1.S1_at--600--4871Chr12:24077419..24077443 (25 bp)
GCTATTTGCCGTCAAGCTTTGGATA
LOC_Os12g39170
OsAffx.20023.1.S1_at--539--3911Chr12:24077267..24077291 (25 bp)
CTGGCGGACATATCTTGTACAACTA
LOC_Os12g39170
OsAffx.20023.1.S1_at--1057--5551Chr12:24077198..24077222 (25 bp)
GAAAGATTCCACCATTTCCTCCAAG
LOC_Os12g39170
OsAffx.20023.1.S1_at--255--7791Chr12:24076347..24076371 (25 bp)
GGTGCCACAATGGAGATCTGCCTTA
LOC_Os12g39170
OsAffx.20023.1.S1_at--526--6411Chr12:24076333..24076357 (25 bp)
GATCTGCCTTACTCGATGGACATCA
LOC_Os12g39170
OsAffx.20023.1.S1_at--213--4251NONE
CCGTGCCTTGGTATACAGTGGTGAC
NONE
OsAffx.20023.1.S1_at--481--7391Chr12:24075643..24075667 (25 bp)
GTGAGATCACTCAACTTCTCTGTTG
LOC_Os12g39170
OsAffx.20023.1.S1_at--1146--8431Chr12:24075451..24075613 (25 bp)
GGCCAGTCAGCAGGGTTCACCATAA
LOC_Os12g39170
OsAffx.20023.1.S1_at--509--5511Chr12:24075419..24075443 (25 bp)
GAACAACATGACTTTCGCTACTGTA
LOC_Os12g39170
OsAffx.20023.1.S1_at--669--6971Chr12:24075092..24075116 (25 bp)
GTAGCCACACAGTACCAGAGTTTGA
LOC_Os12g39170
Target Sequence 
GAGAGGATTATAGCAACCCCAAGAATGCTATTTGCCGTCAAGCTTTGGATAGGTTTAACGAACTGCTTGGCGAAAGTTCT
GGCGGACATATCTTGTACAACTATTGTATTTACGATAGTGATATAGATGGATCGATCCAGGAAAAACGAAAGATTCCACC
ATTTCCTCCAAGAGAATGTATTGGAAGTGTCGATGAGTGGTTAAGGTGCCACAATGGAGATCTGCCTTACTCGATGGACA
TCAAAAGCAACATAAAGTTTCATCACAATGTTACAACAAAAGGTTACCGTGCCTTGGTATACAGTGGTGACCATGATGCA
ATGATACCATTTTTGGGCACACAAGCCTGGGTGAGATCACTCAACTTCTCTGTTGTAGATGACTGGAGGGCTTGGCACGT
CGATGGCCAGTCAGCAGGGTTCACCATAACGTATATGAACAACATGACTTTCGCTACTGTAAAGGGTGGTAGCCACACAG
TACCAGAGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis