Browse Element(s) Details


OsAffx.20027.1.S1_at

Description tigr:9640.m03853
TID=OsAffx.20027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3947011/11hypothetical protein
LOC_Os08g100501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39450OsAffx.32095.1.S1_at5/1112+24281621..24283158hypothetical protein
LOC_Os12g39460NANA12+24287085..24287702hypothetical protein
LOC_Os12g39470OsAffx.20027.1.S1_at11/1112+24289112..24291061hypothetical protein
LOC_Os12g39480NANA12+24299577..24299846hypothetical protein
LOC_Os12g39490NANA12+24304170..24305811hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20027.1.S1_at--803--8231Chr12:24289146..24289170 (25 bp)
GGCAACAACGCCGAATGAGCTTGGG
LOC_Os12g39470
OsAffx.20027.1.S1_at--270--4531Chr12:24289243..24289264 (22 bp)
GCCCTCACCGTCCAAACTAAGGAAG
LOC_Os12g39470
OsAffx.20027.1.S1_at--1011--5611Chr12:24289750..24289774 (25 bp)
GACAACGCATACTTCATTTGGTAGC
LOC_Os12g39470
OsAffx.20027.1.S1_at--57--7471Chr12:24290848..24290872 (25 bp)
GTGTGATGGTCACTACCAGCTGCAT
LOC_Os12g39470
OsAffx.20027.1.S1_at--817--3812Chr12:24290891..24290915 (25 bp)
CTCCATGTTGAGTTGGATCCAGCGA
LOC_Os12g39470
OsAffx.20027.1.S1_at--109--6371Chr12:24290906..24290930 (25 bp)
GATCCAGCGATCGAGTCGACGGTAG
LOC_Os12g39470
OsAffx.20027.1.S1_at--307--1911Chr12:24290924..24290948 (25 bp)
ACGGTAGCGGAATGGAGCCCTCGAA
LOC_Os12g39470
OsAffx.20027.1.S1_at--917--5391Chr12:24290949..24290973 (25 bp)
GAAGCTGTCGAGTTCCAAGCTCGGA
LOC_Os12g39470
OsAffx.20027.1.S1_at--89--4391Chr12:24290963..24290987 (25 bp)
CCAAGCTCGGAAATGGCGGCTGTGT
LOC_Os12g39470
OsAffx.20027.1.S1_at--502--3931Chr12:24290979..24291003 (25 bp)
CGGCTGTGTGCGACTTGGATAGCAT
LOC_Os12g39470
OsAffx.20027.1.S1_at--473--10851Chr12:24290993..24291017 (25 bp)
TTGGATAGCATTGCCACCACAGGTG
LOC_Os12g39470
Target Sequence 
GGCAACAACGCCGAATGAGCTTGGGGATGGGGGCTGAGGCCATGGGATGGGAGGGCCATCGCTGTCGACCACCCCACCGC
CTCGCCTACATCCAGTCGCCCTCACCGTCCAAACTAAGGAAGACAACGCATACTTCATTTGGTAGCAAGTTGAAGTGTGA
TGGTCACTACCAGCTGCATCCTGCAGTGGCTGCAAATCTCCATGTTGAGTTGGATCCAGCGATCGAGTCGACGGTAGCGG
AATGGAGCCCTCGAAGAAGCTGTCGAGTTCCAAGCTCGGAAATGGCGGCTGTGTGCGACTTGGATAGCATTGCCACCACA
GGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis