Browse Element(s) Details


OsAffx.32095.1.S1_at

Description tigr:9640.m03851
TID=OsAffx.32095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g394505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39450OsAffx.32095.1.S1_at5/1112+24281621..24283158hypothetical protein
LOC_Os12g39460NANA12+24287085..24287702hypothetical protein
LOC_Os12g39470OsAffx.20027.1.S1_at11/1112+24289112..24291061hypothetical protein
LOC_Os12g39480NANA12+24299577..24299846hypothetical protein
LOC_Os12g39490NANA12+24304170..24305811hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32095.1.S1_at--299--8051Chr12:24281280..24281304 (25 bp)
GGAGACAAAGGCAACTGCACCCCAG
NONE
OsAffx.32095.1.S1_at--495--3412Chr12:24284681..24284705 (25 bp)
CAGCAGCTTGCAATGGTTGGCCTAG
NONE
OsAffx.32095.1.S1_at--558--4951Chr12:24281330..24281354 (25 bp)
GCATCAGAAATCCTTTGAAATCTTT
NONE
OsAffx.32095.1.S1_at--143--3691Chr12:24281342..24281468 (25 bp)
CTTTGAAGTTTGCATCCTGCAGTGC
NONE
OsAffx.32095.1.S1_at--256--571Chr12:24281457..24281481 (25 bp)
ATCCTGCAGTGCGTTGGAATAGCAG
NONE
OsAffx.32095.1.S1_at--742--8211NONE
GGAATAGCAGAAAGCCATGTTCAAT
NONE
OsAffx.32095.1.S1_at--660--6991Chr12:24282284..24282308 (25 bp)
GTACGACAACAATGCAGTGAAACAA
LOC_Os12g39450
OsAffx.32095.1.S1_at--564--2451Chr12:24282304..24282328 (25 bp)
AACAACAATGCAACTTTCGTTCAGT
LOC_Os12g39450
OsAffx.32095.1.S1_at--1132--3491Chr12:24283053..24283077 (25 bp)
CATGGAGATGATCGGCATGTGCACA
LOC_Os12g39450
OsAffx.32095.1.S1_at--329--1491Chr12:24283080..24283104 (25 bp)
AGCAAATGCTAGCTGGATATTGTCA
LOC_Os12g39450
OsAffx.32095.1.S1_at--995--6511Chr12:24283095..24283119 (25 bp)
GATATTGTCATATACCCTATGCATG
LOC_Os12g39450
Target Sequence 
GGAGACAAAGGCAACTGCACCCCAGCAGCTTGCAATGGTTGGCCTAGGAGGCATCAGAAATCCTTTGAAATCTTTGAAGT
TTGCATCCTGCAGTGCGTTGGAATAGCAGAAAGCCATGTTCAATTTCTGCAATGCCACCAGCAGCAATACATGTTGTACG
ACAACAATGCAGTGAAACAACAATGCAACTTTCGTTCAGTTATTAGAAGGAGTAAGAAGTCCAGAATCATGGAGATGATC
GGCATGTGCACAGAAGCAAATGCTAGCTGGATATTGTCATATACCCTATGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis