Browse Element(s) Details


OsAffx.20065.1.S1_at

Description tigr:9640.m04010
TID=OsAffx.20065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g409908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein
LOC_Os12g40950NANA12+25324887..25325406hypothetical protein
LOC_Os12g40960OsAffx.32126.1.S1_x_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40960OsAffx.32126.1.S1_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40970Os.14491.2.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40970Os.47463.1.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40980NANA12+25330713..25331532hypothetical protein
LOC_Os12g40990OsAffx.20065.1.S1_at8/1112+25333243..25335275hypothetical protein
LOC_Os12g41000NANA12+25337542..25343357retrotransposon protein, putative, unclassified
LOC_Os12g41010NANA12+25343985..25347266retrotransposon protein, putative, unclassified
LOC_Os12g41020NANA12+25348084..25349022retrotransposon protein, putative, unclassified
LOC_Os12g41030NANA12+25351562..25351984AP2 domain containing protein, expressed
LOC_Os12g41040OsAffx.20066.1.S1_at11/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.47463.1.S1_x_at3/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.14491.2.S1_x_at2/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20065.1.S1_at--574--4012Chr12:25333278..25333302 (25 bp)
CGTCCGGCTTTATTGCCCATCTTTG
LOC_Os12g40990
OsAffx.20065.1.S1_at--123--8291Chr12:25333283..25333307 (25 bp)
GGCTTTATTGCCCATCTTTGCCACC
LOC_Os12g40990
OsAffx.20065.1.S1_at--813--9251NONE
TCCTCTTCATCTCCCGGACTAGTGG
NONE
OsAffx.20065.1.S1_at--889--9591NONE
TCATCTCCCGGACTAGTGGAAGTAG
NONE
OsAffx.20065.1.S1_at--165--5671Chr12:25334029..25334053 (25 bp)
GACTAGTGGAAGTAGATCCTTTGAA
LOC_Os12g40990
OsAffx.20065.1.S1_at--373--6351Chr12:25334043..25334067 (25 bp)
GATCCTTTGAAAGTATGGTTACTGG
LOC_Os12g40990
OsAffx.20065.1.S1_at--1038--10091NONE
TATGGTTACTGGAGTGTGATGAACA
NONE
OsAffx.20065.1.S1_at--991--8851Chr12:25334738..25334762 (25 bp)
TGATGAACATGAACTGCTGTTGATT
LOC_Os12g40990
OsAffx.20065.1.S1_at--1028--8971Chr12:25334747..25334771 (25 bp)
TGAACTGCTGTTGATTGTTTGGACT
LOC_Os12g40990
OsAffx.20065.1.S1_at--295--10792Chr12:25334757..25334781 (25 bp)
TTGATTGTTTGGACTGGTCAGACCG
LOC_Os12g40990
OsAffx.20065.1.S1_at--631--2051Chr12:25335069..25335093 (25 bp)
ACTTGAGAGAAGATGACACTTGGAT
LOC_Os12g40990
Target Sequence 
CGTCCGGCTTTATTGCCCATCTTTGCCACCCTCCTCTTCATCTCCCGGACTAGTGGAAGTAGATCCTTTGAAAGTATGGT
TACTGGAGTGTGATGAACATGAACTGCTGTTGATTGTTTGGACTGGTCAGACCGGGCAGGTGGTCTTGATGCCTCGGGAG
AGTATTGCCGGTGATGGATCGGGAGTCAACTTGAGAGAAGATGACACTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis