Browse Element(s) Details


Os.49988.1.S1_at

Description gb:AK119494.1
DB_XREF= gi:37989117
TID=Os.49988.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D10, full insert sequence.
FL= gb:AK119494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4094011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein
LOC_Os12g40950NANA12+25324887..25325406hypothetical protein
LOC_Os12g40960OsAffx.32126.1.S1_x_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40960OsAffx.32126.1.S1_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40970Os.14491.2.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40970Os.47463.1.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40980NANA12+25330713..25331532hypothetical protein
LOC_Os12g40990OsAffx.20065.1.S1_at8/1112+25333243..25335275hypothetical protein
LOC_Os12g41000NANA12+25337542..25343357retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49988.1.S1_at--405--2471Chr12:25312682..25312706 (25 bp)
AACACACCCTTATTGCAGCTTGAAA
LOC_Os12g40940
Os.49988.1.S1_at--801--8832Chr12:25312747..25312771 (25 bp)
TGATAGATCTATTCCACGCACAACT
LOC_Os12g40940
Os.49988.1.S1_at--635--3111Chr12:25312778..25312802 (25 bp)
AATATATTCCTTCTTCATTCCCAGT
LOC_Os12g40940
Os.49988.1.S1_at--214--7391Chr12:25312801..25312825 (25 bp)
GTGAGATACTCCAGCTACTTGTAGT
LOC_Os12g40940
Os.49988.1.S1_at--713--9811Chr12:25312862..25312886 (25 bp)
TAACTTGCATTCTTATAGGCTTTGT
LOC_Os12g40940
Os.49988.1.S1_at--129--971Chr12:25312892..25312916 (25 bp)
AGGAGCGGATGTGAACCACTCCTCT
LOC_Os12g40940
Os.49988.1.S1_at--293--3811Chr12:25312915..25312939 (25 bp)
CTCCGGCCGGCACGTATATAACAAA
LOC_Os12g40940
Os.49988.1.S1_at--811--8231Chr12:25313037..25313061 (25 bp)
GGCAAAAGATCACGTACTACCATTT
LOC_Os12g40940
Os.49988.1.S1_at--635--9991Chr12:25313127..25313151 (25 bp)
TAGCCTTATTGATCTCAGGAGTCAC
LOC_Os12g40940
Os.49988.1.S1_at--1127--7051Chr12:25313175..25313199 (25 bp)
GTAAGCTCATGCATATCCAAGATTG
LOC_Os12g40940
Os.49988.1.S1_at--1054--6592Chr12:25313195..25313219 (25 bp)
GATTGTATTCCAAGTCCTTTTATAG
LOC_Os12g40940
Target Sequence 
AACACACCCTTATTGCAGCTTGAAAGTTCCACAAAGTTAATACTATTATTATTACCATTTTAATTTGATAGATCTATTCC
ACGCACAACTAAATGAAATATATTCCTTCTTCATTCCCAGTGAGATACTCCAGCTACTTGTAGTATTTTATTTTCACAAG
AAATCAATTATATAGATGGATAACTTGCATTCTTATAGGCTTTGTTTGGGAGGAGCGGATGTGAACCACTCCTCTCCGGC
CGGCACGTATATAACAAAACATTCTTTAGCGTATAATTAATTAAGTATTAGTTTAAAAAATTTAAAAATATATTAATATG
ATTTTTTTAAAGAAAGTTTTCAATAGAAAACTTTTGGCAAAAGATCACGTACTACCATTTAACAGTTTAGAAAACATGCT
CGTAAAAAAAAAGAAAAATAAGTTGAGAAAGCAAGGAGAAGAACATAGCCTTATTGATCTCAGGAGTCACAAAGGATGCA
TGTACACTACTATGTAAGCTCATGCATATCCAAGATTGTATTCCAAGTCCTTTTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis