Browse Element(s) Details


OsAffx.20063.1.S1_at

Description tigr:9640.m04005
TID=OsAffx.20063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4093011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein
LOC_Os12g40950NANA12+25324887..25325406hypothetical protein
LOC_Os12g40960OsAffx.32126.1.S1_x_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40960OsAffx.32126.1.S1_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40970Os.14491.2.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40970Os.47463.1.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40980NANA12+25330713..25331532hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20063.1.S1_at--829--9131Chr12:25304593..25304617 (25 bp)
TGCGGGTGCGGTGTTCCATCTGCTC
LOC_Os12g40930
OsAffx.20063.1.S1_at--1017--10671Chr12:25304580..25304604 (25 bp)
TTCCATCTGCTCGTGCGCCATGTTG
LOC_Os12g40930
OsAffx.20063.1.S1_at--668--6211Chr12:25304452..25304476 (25 bp)
GAGGCCTTGGAGGTGATCCTCTCAA
LOC_Os12g40930
OsAffx.20063.1.S1_at--145--8011Chr12:25304444..25304468 (25 bp)
GGAGGTGATCCTCTCAAAGCTGAAG
LOC_Os12g40930
OsAffx.20063.1.S1_at--29--432Chr09:22516280..22516303 (24 bp)
ATCTTGAGGTCGTCGTGCTTGCGGA
NONE
OsAffx.20063.1.S1_at--219--9071Chr12:25304374..25304398 (25 bp)
TGCTTGCGGAGGACGTTCTGTGCTA
LOC_Os12g40930
OsAffx.20063.1.S1_at--44--8111Chr12:25304364..25304388 (25 bp)
GGACGTTCTGTGCTATGGCCTTGAC
LOC_Os12g40930
OsAffx.20063.1.S1_at--696--871Chr12:25304350..25304374 (25 bp)
ATGGCCTTGACGTATTCGGAGCGGT
LOC_Os12g40930
OsAffx.20063.1.S1_at--546--10212Chr05:19705862..19705881 (20 bp)
TATTCGGAGCGGTTTTCGGCCTCGG
NONE
OsAffx.20063.1.S1_at--756--7551Chr12:25304285..25304309 (25 bp)
GGGCGCTCCTCTTCCAGGTTAGCAG
LOC_Os12g40930
OsAffx.20063.1.S1_at--1024--10431Chr12:25304267..25304291 (25 bp)
TTAGCAGCCAGGTCGTGCAGGCGCT
LOC_Os12g40930
Target Sequence 
TGCGGGTGCGGTGTTCCATCTGCTCGTGCGCCATGTTGCTGGCGTGGTTGGCGGGGAGGCTGGAGGAGTACTTGTGGGAG
GTGGGGAGCGGCGTGGGCAAGGCGGCGGCGGTGGCGGCACGGTGGAGGTGGCGGCGACGGGGAGGCCTTGGAGGTGATCC
TCTCAAAGCTGAAGGTGAGCATGGAGGAGGCGGTGGAGGCCTCGATCTTGAGGTCGTCGTGCTTGCGGAGGACGTTCTGT
GCTATGGCCTTGACGTATTCGGAGCGGTTTTCGGCCTCGGCGACGGATTCCTCGGCCTTGCGGTGGAGGGGCGCTCCTCT
TCCAGGTTAGCAGCCAGGTCGTGCAGGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis