Browse Element(s) Details


OsAffx.32125.1.S1_at

Description tigr:9640.m04003
TID=OsAffx.32125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4091011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32125.1.S1_at--333--1091Chr12:25295028..25295052 (25 bp)
AGTGGCCGAGGTGAGTTCATCGCAT
LOC_Os12g40910
OsAffx.32125.1.S1_at--1135--8891Chr12:25295017..25295041 (25 bp)
TGAGTTCATCGCATGGTCTTCCTCT
LOC_Os12g40910
OsAffx.32125.1.S1_at--387--8011Chr12:25294916..25294940 (25 bp)
GGAGGCGTGGGCATGACCTCCCCAA
LOC_Os12g40910
OsAffx.32125.1.S1_at--482--2591Chr12:25294893..25294917 (25 bp)
AACGCGATTTCGAGTCGTCACCCGG
LOC_Os12g40910
OsAffx.32125.1.S1_at--1087--7071Chr12:25294734..25294901 (25 bp)
GTCACCCGGTCGACGCACTATGAAT
LOC_Os12g40910
OsAffx.32125.1.S1_at--743--5791Chr12:25294723..25294747 (25 bp)
GACGCACTATGAATGGCCCCGTGAG
LOC_Os12g40910
OsAffx.32125.1.S1_at--651--4531Chr12:25294708..25294732 (25 bp)
GCCCCGTGAGAAGAGTGAGAGCCAA
LOC_Os12g40910
OsAffx.32125.1.S1_at--474--1691Chr12:25294689..25294713 (25 bp)
AGCCAAGTAGACAAAGTATCCTCGT
LOC_Os12g40910
OsAffx.32125.1.S1_at--99--6911Chr12:25294674..25294698 (25 bp)
GTATCCTCGTCAATTGTATTCAAAG
LOC_Os12g40910
OsAffx.32125.1.S1_at--901--6491Chr12:25294650..25294674 (25 bp)
GATAGGAGGACAGACACAGCACAAT
LOC_Os12g40910
OsAffx.32125.1.S1_at--792--3411Chr12:25294606..25294630 (25 bp)
CAGAGCTATAGCTTCTGCATCAACC
LOC_Os12g40910
Target Sequence 
AGTGGCCGAGGTGAGTTCATCGCATGGTCTTCCTCTCCTGAGCACTTCTTCTCTGGCCGCCAGAGCTTGGGGAGACACCG
GGGTGTGGGGTGTGGGAGTTGCGGGGGCACAAGGAGGCGTGGGCATGACCTCCCCAACGCGATTTCGAGTCGTCACCCGG
TCGACGCACTATGAATGGCCCCGTGAGAAGAGTGAGAGCCAAGTAGACAAAGTATCCTCGTCAATTGTATTCAAAGATAG
GAGGACAGACACAGCACAATGGACAGAACTAAAAGCTATCAGAGCTATAGCTTCTGCATCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis