Browse Element(s) Details


OsAffx.10340.1.S1_x_at

Description gb:NM_185652.1
DB_XREF= gi:34898389
TID=OsAffx.10340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g409208/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein
LOC_Os12g40950NANA12+25324887..25325406hypothetical protein
LOC_Os12g40960OsAffx.32126.1.S1_x_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40960OsAffx.32126.1.S1_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40970Os.14491.2.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40970Os.47463.1.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10340.1.S1_x_at--287--7152Chr12:25297940..25298012 (25 bp)
GTCTTCGTCGGAGAGGCAGCGGCGC
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--1125--4272Chr12:25298017..25298041 (25 bp)
CCTCGTGGAGGAGTCTGGAGCTACT
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--945--1871Chr06:3356832..3356856 (25 bp)
ACGAGGCGGCGCAGCGACGCAACAA
NONE
OsAffx.10340.1.S1_x_at--511--3391Chr06:3356825..3356845 (21 bp)
CAGCGACGCAACAACGGCGTGAGAA
NONE
OsAffx.10340.1.S1_x_at--420--2153Chr12:25298148..25298346 (25 bp)
AACGGCGTGAGAAAAATGAGGGATA
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--798--2435Chr04:26223563..26223586 (24 bp)
AAAATGAGGGATACGTATGGGATAC
NONE
OsAffx.10340.1.S1_x_at--607--4016Chr12:25298278..25298371 (25 bp)
CGTATGGGATACGTATCCGGCCGTA
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--727--6896Chr12:25298359..25298383 (25 bp)
GTATCCGGCCGTATCCCGCACGTAT
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--1053--10118Chr12:25298370..25298394 (25 bp)
TATCCCGCACGTATCCGTATCCGGA
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--245--553Chr12:25298382..25298406 (25 bp)
ATCCGTATCCGGACGCGTATCAGAT
LOC_Os12g40920
OsAffx.10340.1.S1_x_at--721--6895Chr12:25298386..25298410 (25 bp)
GTATCCGGACGCGTATCAGATACTG
LOC_Os12g40920
Target Sequence 
GTCTTCGTCGGAGAGGCAGCGGCGCGACGCCTCGTGGAGGAGTCTGGAGCTACTGGAGGAGAGTGCAGAGGAGGGGGCAC
GGAGAAGGCTGTAGGCGGCGGCGCGGCGCGGTGCCGGTCGCTGGCGGTGGGCCGGCGACGAGGCGGCGCAGCGACGCAAC
AACGGCGTGAGAAAAATGAGGGATACGTATGGGATACGTATCCGGCCGTATCCCGCACGTATCCGTATCCGGACGCGTAT
CAGATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10340.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis