Browse Element(s) Details


Os.10109.1.S1_at

Description gb:AK068213.1
DB_XREF= gi:32978231
TID=Os.10109.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149K13, full insert sequence.
FL= gb:AK068213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4089011/11Auxin-induced protein AUX28, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40850OsAffx.20061.1.S1_at10/1112+25261123..25262707hypothetical protein
LOC_Os12g40850OsAffx.16028.1.S1_x_at1/1112+25261123..25262707hypothetical protein
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0040008biological_processregulation of growth
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10109.1.S1_at--887--6651Chr12:25277960..25277984 (25 bp)
GTTGAATCATGCAAGCGCCTTAGGA
LOC_Os12g40890
Os.10109.1.S1_at--895--391Chr12:25277930..25277949 (20 bp)
ATCAGAAGCTATTGGCCTTGCACCG
LOC_Os12g40890
Os.10109.1.S1_at--974--5471Chr12:25277719..25277743 (25 bp)
GAACATGTCGCCATCAAAAACGGAT
LOC_Os12g40890
Os.10109.1.S1_at--415--9551Chr12:25277657..25277681 (25 bp)
TCTTAATTGCAGCTTTGCCTCATCC
LOC_Os12g40890
Os.10109.1.S1_at--858--7171Chr12:25277598..25277622 (25 bp)
GTCTGTACCTTTCCTGATCAGTGAA
LOC_Os12g40890
Os.10109.1.S1_at--304--10851Chr12:25277566..25277590 (25 bp)
TTGGTGTTGTGGTCAGTTTCTGTTC
LOC_Os12g40890
Os.10109.1.S1_at--456--9471Chr12:25277543..25277567 (25 bp)
TCTGTTGCAGTCATTAAGTTCCTAA
LOC_Os12g40890
Os.10109.1.S1_at--716--6691Chr12:25277526..25277550 (25 bp)
GTTCCTAAGTGTGTCATCTTGTCTT
LOC_Os12g40890
Os.10109.1.S1_at--554--6971Chr12:25277475..25277499 (25 bp)
GTACCAGTAGTACCTGTCCCATAAT
LOC_Os12g40890
Os.10109.1.S1_at--1090--10111Chr12:25277450..25277474 (25 bp)
TATGTCTTTTTTGCTCTCCCTGTTC
LOC_Os12g40890
Os.10109.1.S1_at--252--2991Chr12:25277385..25277409 (25 bp)
AATGTAAAGGCACCCTGCTCAAAGG
LOC_Os12g40890
Target Sequence 
GTTGAATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGCACCGAGGGCAATGGAGAAATGCAA
GAACAGAAGCTGAGAAAGAAGAACATGTCGCCATCAAAAACGGATGGATCATCATCAGATGCAACAATCTATCTATAGCT
TTTCTTAATTGCAGCTTTGCCTCATCCCTGTATCATACTCGCTTGCTGTCCTCATCTCCAAGTCTGTACCTTTCCTGATC
AGTGAAAGTCATTTTGGTGTTGTGGTCAGTTTCTGTTCTGTTGCAGTCATTAAGTTCCTAAGTGTGTCATCTTGTCTTAT
ACATAAGAAAGAAGCCAAGAACATGTACCAGTAGTACCTGTCCCATAATTATGTCTTTTTTGCTCTCCCTGTTCTTCCCT
TTCTCTCTGTTTTTTTNTTNCCTTAATGGCACAAAATGTAAAGGCACCCTGCTCAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis