Browse Element(s) Details


OsAffx.20061.1.S1_at

Description tigr:9640.m03997
TID=OsAffx.20061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4085010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed
LOC_Os12g40840Os.9919.1.S1_s_at11/1112+25248685..25250749expressed protein
LOC_Os12g40850OsAffx.20061.1.S1_at10/1112+25261123..25262707hypothetical protein
LOC_Os12g40850OsAffx.16028.1.S1_x_at1/1112+25261123..25262707hypothetical protein
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20061.1.S1_at--910--9531NONE
TCTTTGGAGGCCACCGGCTGCCACA
NONE
OsAffx.20061.1.S1_at--325--2091Chr12:25262050..25262074 (25 bp)
ACATCAGCGAATACCACCGTCAATA
LOC_Os12g40850
OsAffx.20061.1.S1_at--796--5231Chr12:25262058..25262082 (25 bp)
GAATACCACCGTCAATACTGTCATG
LOC_Os12g40850
OsAffx.20061.1.S1_at--297--9971Chr12:25262061..25262085 (25 bp)
TACCACCGTCAATACTGTCATGGGA
LOC_Os12g40850
OsAffx.20061.1.S1_at--1103--4231Chr12:25262066..25262090 (25 bp)
CCGTCAATACTGTCATGGGAGTCAT
LOC_Os12g40850
OsAffx.20061.1.S1_at--237--812Chr12:25262080..25262104 (25 bp)
ATGGGAGTCATGTTGCACGGTTTTA
LOC_Os12g40850
OsAffx.20061.1.S1_at--590--6092Chr12:25262084..25262108 (25 bp)
GAGTCATGTTGCACGGTTTTAACAG
LOC_Os12g40850
OsAffx.20061.1.S1_at--836--5072Chr12:25262094..25262118 (25 bp)
GCACGGTTTTAACAGTTGGAGGATA
LOC_Os12g40850
OsAffx.20061.1.S1_at--1057--6451Chr12:25262115..25262139 (25 bp)
GATACAATATACTCGATTTTACCGT
LOC_Os12g40850
OsAffx.20061.1.S1_at--823--231Chr12:25262121..25262145 (25 bp)
ATATACTCGATTTTACCGTTGAGAG
LOC_Os12g40850
OsAffx.20061.1.S1_at--723--10371Chr12:25262131..25262155 (25 bp)
TTTTACCGTTGAGAGATACTCCATC
LOC_Os12g40850
Target Sequence 
TCTTTGGAGGCCACCGGCTGCCACATCAGCGAATACCACCGTCAATACTGTCATGGGAGTCATGTTGCACGGTTTTAACA
GTTGGAGGATACAATATACTCGATTTTACCGTTGAGAGATACTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis