Browse Element(s) Details


Os.7623.1.S1_at

Description gb:AK066514.1
DB_XREF= gi:32976532
TID=Os.7623.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069D01, full insert sequence.
FL= gb:AK066514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4083010/11Pyridoxal kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified
LOC_Os12g40820NANA12+25232713..25235991retrotransposon protein, putative, unclassified
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed
LOC_Os12g40840Os.9919.1.S1_s_at11/1112+25248685..25250749expressed protein
LOC_Os12g40850OsAffx.20061.1.S1_at10/1112+25261123..25262707hypothetical protein
LOC_Os12g40850OsAffx.16028.1.S1_x_at1/1112+25261123..25262707hypothetical protein
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008615biological_processpyridoxine biosynthesis
GO:0010054biological_processtrichoblast differentiation
GO:0042538biological_processhyperosmotic salinity response
GO:0008478molecular_functionpyridoxal kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7623.1.S1_at--412--1991Chr12:25242248..25242272 (25 bp)
ACTGCCCTTCTACTAGGATGGAGTA
LOC_Os12g40830
Os.7623.1.S1_at--932--331Chr12:25242409..25242433 (25 bp)
ATAACCTTGAGAGGGCGGCTGAACT
LOC_Os12g40830
Os.7623.1.S1_at--561--1951NONE
ACTGGCGGTATCCAGTTTGCAGGCA
NONE
Os.7623.1.S1_at--1061--6371Chr12:25242962..25242986 (25 bp)
GATCCGCTTGATTCAAAGCCAGGAT
LOC_Os12g40830
Os.7623.1.S1_at--1149--7971Chr12:25242983..25243007 (25 bp)
GGATGAAATTCGAAGGCCCCAGATT
LOC_Os12g40830
Os.7623.1.S1_at--788--8411Chr12:25242997..25243021 (25 bp)
GGCCCCAGATTACATGCAAGGCTGT
LOC_Os12g40830
Os.7623.1.S1_at--48--8511Chr12:25243051..25243075 (25 bp)
TGGCAAGCATCATCAAACATCAATT
LOC_Os12g40830
Os.7623.1.S1_at--741--3131Chr12:25243116..25243140 (25 bp)
AATTTTGGTATTCTGCTTGTATGCA
LOC_Os12g40830
Os.7623.1.S1_at--1113--3071Chr12:25243237..25243261 (25 bp)
AATAATACACATGCTGCCTTCTCTC
LOC_Os12g40830
Os.7623.1.S1_at--1094--6811Chr12:25243311..25243335 (25 bp)
GTTTTTGTGCCTATGAGACTGATAT
LOC_Os12g40830
Os.7623.1.S1_at--1073--31Chr12:25243334..25243358 (25 bp)
ATTGTACAAGGGATAGCTCCATCTT
LOC_Os12g40830
Target Sequence 
ACTGCCCTTCTACTAGGATGGAGTAATAAATACCCTGATAACCTTGAGAGGGCGGCTGAACTGGCGGTATCCAGTTTGCA
GGCACTCCTAAGGANGAACTGTGGAAGACTATAAAAGAGCTGGGTTTGACCCCTCCACCAGCANGCCTAGAGATCCGCTT
GATTCAAAGCCAGGATGAAATTCGAAGGCCCCAGATTACATGCAAGGCTGTGAAGTATAGCTGAAACCATATCACAACCA
TGGCAAGCATCATCAAACATCAATTAGTGAATAGTGACTGGAGGGAGAGTACCAGTGTTAAAAACAATTTTGGTATTCTG
CTTGTATGCACAATATTCATCAACATGCTTCCTGGCTTCAACTCTGGGGATACCATTTTAGTTGATCATAGTTTCAAAAC
AAGAAAGGGTCTGATTTCAAAAACAAAATAATACACATGCTGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAA
TCTCCTTTACAATTTGTCATGTTTTTGTGCCTATGAGACTGATATTGTACAAGGGATAGCTCCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis