Browse Element(s) Details


Os.9919.1.S1_s_at

Description gb:CB674009
DB_XREF= gi:29677734
DB_XREF=OSJNEe08N11.r
CLONE=OSJNEe08N11
TID=Os.9919.1
CNT=31
FEA=EST
TIER=Stack
STK=10
UG=Os.9919 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564931.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4084011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified
LOC_Os12g40820NANA12+25232713..25235991retrotransposon protein, putative, unclassified
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed
LOC_Os12g40840Os.9919.1.S1_s_at11/1112+25248685..25250749expressed protein
LOC_Os12g40850OsAffx.20061.1.S1_at10/1112+25261123..25262707hypothetical protein
LOC_Os12g40850OsAffx.16028.1.S1_x_at1/1112+25261123..25262707hypothetical protein
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9919.1.S1_s_at--612--2271Chr12:25249173..25249197 (25 bp)
AAATCTCAGGTGTCAAGGTCCTTGA
LOC_Os12g40840
Os.9919.1.S1_s_at--1108--1011Chr12:25249158..25249182 (25 bp)
AGGTCCTTGATGTAAATTCTATGGG
LOC_Os12g40840
Os.9919.1.S1_s_at--404--951Chr12:25249084..25249108 (25 bp)
AGGAGAGCCCTTTTGGATTTAATCA
LOC_Os12g40840
Os.9919.1.S1_s_at--614--2451Chr12:25249056..25249080 (25 bp)
AAAATTTTTCTCTTCATCTGTCCCT
LOC_Os12g40840
Os.9919.1.S1_s_at--886--471Chr12:25249041..25249065 (25 bp)
ATCTGTCCCTGTAAACTCTCTTTGG
LOC_Os12g40840
Os.9919.1.S1_s_at--190--2551Chr12:25249028..25249052 (25 bp)
AACTCTCTTTGGGATTTAGTAGCTA
LOC_Os12g40840
Os.9919.1.S1_s_at--1073--7851Chr12:25248964..25248988 (25 bp)
GGTATCTGTCCCTAGTTTATTCTAT
LOC_Os12g40840
Os.9919.1.S1_s_at--338--6292Chr12:25248933..25248957 (25 bp)
GATGATGCTTATTTTTGGTTTTTGA
LOC_Os12g40840
Os.9919.1.S1_s_at--739--5191Chr12:25248906..25248930 (25 bp)
GAATTGTTTTTTGTCCATGCAACCA
LOC_Os12g40840
Os.9919.1.S1_s_at--834--5131Chr12:25248875..25248899 (25 bp)
GCAAAGGCCATGGAGATATGTACAA
LOC_Os12g40840
Os.9919.1.S1_s_at--1066--4991Chr12:25248821..25248845 (25 bp)
GCAGCTTAGCTTTAGGTTCAATCAG
LOC_Os12g40840
Target Sequence 
AAATCTCAGGTGTCAAGGTCCTTGATGTAAATTCTATGGGGGGTTTAGAAAATTTAGAGGGAGGAGACAGGGACAAAAGG
GGTTCATCAAGGAGAGCCCTTTTGGATTTAATCAAAAAAAATTTTTCTCTTCATCTGTCCCTGTAAACTCTCTTTGGGAT
TTAGTAGCTAATTGAATTAGTAGGTGGGAAGGGGGGTTGGGATTAGTTAGGTATCTGTCCCTAGTTTATTCTATCATGAT
GATGATGCTTATTTTTGGTTTTTGATGGAATTGTTTTTTGTCCATGCAACCAAGAAATGCAAAGGCCATGGAGATATGTA
CAAAAGAGTGGCTACAAGAAGAGAGTAAGAGAGCAGCTTAGCTTTAGGTTCAATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9919.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis