Browse Element(s) Details


Os.5887.1.S1_a_at

Description gb:AK059928.1
DB_XREF= gi:32969946
TID=Os.5887.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A06, full insert sequence.
FL= gb:AK059928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4088011/11phosphoribulokinase/uridine kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40840Os.9919.1.S1_s_at11/1112+25248685..25250749expressed protein
LOC_Os12g40850OsAffx.20061.1.S1_at10/1112+25261123..25262707hypothetical protein
LOC_Os12g40850OsAffx.16028.1.S1_x_at1/1112+25261123..25262707hypothetical protein
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5887.1.S1_a_at--415--1071Chr12:25274469..25274493 (25 bp)
AGGGTTCAGTTTATGCTCCATCATT
LOC_Os12g40880
Os.5887.1.S1_a_at--25--6131Chr12:25275079..25275103 (25 bp)
GAGGGACATTAGAGCCTTGTTTGAT
LOC_Os12g40880
Os.5887.1.S1_a_at--719--6271Chr12:25275338..25275362 (25 bp)
GATGTCTCCATGCAAAGAGTGCTCC
LOC_Os12g40880
Os.5887.1.S1_a_at--38--1351Chr12:25275353..25275377 (25 bp)
AGAGTGCTCCAGAGACATGTCGCCA
LOC_Os12g40880
Os.5887.1.S1_a_at--663--8711Chr12:25275370..25275486 (25 bp)
TGTCGCCACAGGAAAAGAGCCAGAT
LOC_Os12g40880
Os.5887.1.S1_a_at--809--6271Chr12:25275484..25275840 (25 bp)
GATGTAGCAGCATGGCGGATCTCGT
LOC_Os12g40880
Os.5887.1.S1_a_at--708--7951Chr12:25275833..25275856 (24 bp)
GGATCTCGTATAATGACCGGCCAAA
LOC_Os12g40880
Os.5887.1.S1_a_at--468--1771Chr12:25275847..25275871 (25 bp)
ACCGGCCAAACGCAGAGCTTATCAT
LOC_Os12g40880
Os.5887.1.S1_a_at--917--1351Chr12:25275981..25276005 (25 bp)
AGACACTACCAATGGTTGTTTCCAT
LOC_Os12g40880
Os.5887.1.S1_a_at--482--3091Chr12:25276024..25276048 (25 bp)
AATAAGCTCAATGCATCTCTCCATG
LOC_Os12g40880
Os.5887.1.S1_a_at--462--1711Chr12:25276082..25276106 (25 bp)
ACCAGTTTGGTTGTACAGTCGATGA
LOC_Os12g40880
Target Sequence 
AGGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGTGATCCAGTTGAAAATGACATATTTGTAAAGCCGCAACAC
AAAATAGTGATTGTCGAAGGCAATTATCTATTACTGGAAGNAGATGCCTGGAGGGACATTAGAGCCTTGTTTGATGAAAA
ATGGTTTATCGATATTGACATTGATGTCTCCATGCAAAGAGTGCTCCAGAGACATGTCGCCACAGGAAAAGAGCCAGATG
TAGCAGCATGGCGGATCTCGTATAATGACCGGCCAAACGCAGAGCTTATCATGAAGTCAAAAAAGTCTGCAGATCTTGTA
ATCAGATCGGTGGATTTGTCAAGATAAGAGTNCATGTCTTCAATTGCTGATTAGATATCTGCTCTAATAATGTTCAGAGA
AAGACACTACCAATGGTTGTTTCCATGGAGATCTTTGTACATATAATAAGCTCAATGCATCTCTCCATGGTGATTTTTGT
AGATCAAATAAACTTATCCCCAACCAGTTTGGTTGTACAGTCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5887.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis