Browse Element(s) Details


Os.7855.1.S1_at

Description gb:AK073361.1
DB_XREF= gi:32983384
TID=Os.7855.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027E22, full insert sequence.
FL= gb:AK073361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4090011/11Auxin-induced protein 22D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0040008biological_processregulation of growth
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7855.1.S1_at--161--6291Chr12:25292986..25293010 (25 bp)
GATGTTCATTAGTACGTGCAAGAGG
LOC_Os12g40900
Os.7855.1.S1_at--1060--5391Chr12:25293241..25293265 (25 bp)
GAAGCTTAATTGGAGTCATCAGATT
LOC_Os12g40900
Os.7855.1.S1_at--552--8031Chr12:25293252..25293276 (25 bp)
GGAGTCATCAGATTGCAAAGCATGC
LOC_Os12g40900
Os.7855.1.S1_at--1064--3491Chr12:25293280..25293304 (25 bp)
CATGTGTGGATGTGTGGCTTTAATT
LOC_Os12g40900
Os.7855.1.S1_at--1115--6251Chr12:25293288..25293312 (25 bp)
GATGTGTGGCTTTAATTTGTTTTTT
LOC_Os12g40900
Os.7855.1.S1_at--384--5132Chr12:25293387..25293411 (25 bp)
GCAAACATCTTTTTTCTTTTACATG
LOC_Os12g40900
Os.7855.1.S1_at--528--5291Chr12:25293411..25293435 (25 bp)
GAATGGTTGATTACTTTTGTAACTG
LOC_Os12g40900
Os.7855.1.S1_at--938--4991Chr12:25293450..25293474 (25 bp)
GCATGTATGCATGGGCTGTGTGTAC
LOC_Os12g40900
Os.7855.1.S1_at--443--651Chr12:25293456..25293480 (25 bp)
ATGCATGGGCTGTGTGTACTTCTCC
LOC_Os12g40900
Os.7855.1.S1_at--64--9511Chr12:25293476..25293500 (25 bp)
TCTCCCTCTGGCTTCAATGCTTTGA
LOC_Os12g40900
Os.7855.1.S1_at--1147--4891Chr12:25293486..25293509 (24 bp)
GCTTCAATGCTTTGATTTCCATCCG
LOC_Os12g40900
Target Sequence 
GATGTTCATTAGTACGTGCAAGAGGTTGAGGATCATGAAGGGGTCTGAAGCAAGAGGCCTAGGAGCAACAAGGGGTTAAA
AACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATG
CAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCA
GTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTT
GTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTTGNAGCCTCCNATGTGTGTTTGTAC
AAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGG
GCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGATTTCCATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis