Browse Element(s) Details


OsAffx.20062.1.S1_at

Description tigr:9640.m04004
TID=OsAffx.20062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to light-induced protein CPRF-2 - parsley
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4092011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed
LOC_Os12g40910OsAffx.32125.1.S1_at11/1112+25294576..25295111hypothetical protein
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein
LOC_Os12g40950NANA12+25324887..25325406hypothetical protein
LOC_Os12g40960OsAffx.32126.1.S1_x_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40960OsAffx.32126.1.S1_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40970Os.14491.2.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40970Os.47463.1.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20062.1.S1_at--1064--9511Chr12:25300757..25300781 (25 bp)
TCTTGAGGAAGATACGGACCCCGTT
LOC_Os12g40920
OsAffx.20062.1.S1_at--1108--271Chr12:25300768..25300792 (25 bp)
ATACGGACCCCGTTAATGCAAAGCG
LOC_Os12g40920
OsAffx.20062.1.S1_at--1055--8051Chr12:25300991..25301013 (23 bp)
GGAGAATGCTGTCAAATCGGGAATC
LOC_Os12g40920
OsAffx.20062.1.S1_at--517--2251Chr12:25301002..25301026 (25 bp)
AAATCGGGAATCAGCCAGGAGGTCA
LOC_Os12g40920
OsAffx.20062.1.S1_at--124--8191Chr12:25301034..25301058 (25 bp)
GGAAGCAAGCTCACCTAAACGATCT
LOC_Os12g40920
OsAffx.20062.1.S1_at--794--431Chr12:25301055..25301157 (25 bp)
ATCTAGAATCACAGGTTTCCCAGTT
LOC_Os12g40920
OsAffx.20062.1.S1_at--447--3311Chr12:25301145..25301166 (22 bp)
CACAGGTTTCCCAGTTAAGATCTGA
LOC_Os12g40920
OsAffx.20062.1.S1_at--581--4971Chr12:25301171..25301195 (25 bp)
GCATCTCTGCAAAAGCGCTTGTCTG
LOC_Os12g40920
OsAffx.20062.1.S1_at--12--2371Chr12:25301182..25301206 (25 bp)
AAAGCGCTTGTCTGACATGACTCAG
LOC_Os12g40920
OsAffx.20062.1.S1_at--224--5591Chr12:25301206..25301230 (25 bp)
GAAATATAAGCAATCTACCACAGAA
LOC_Os12g40920
OsAffx.20062.1.S1_at--293--3231Chr12:25301243..25301267 (25 bp)
CAAGATGACATGAACGCTATGAGGA
LOC_Os12g40920
Target Sequence 
TCTTGAGGAAGATACGGACCCCGTTAATGCAAAGCGGACAAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAGGTCAA
GAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAGATCTGAGAATGCATCTCTGCAAAAG
CGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis