Browse Element(s) Details


Os.51731.1.S1_at

Description gb:AK063560.1
DB_XREF= gi:32973578
TID=Os.51731.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F02, full insert sequence.
FL= gb:AK063560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4078011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified
LOC_Os12g40820NANA12+25232713..25235991retrotransposon protein, putative, unclassified
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51731.1.S1_at--1015--2051Chr12:25212321..25212345 (25 bp)
ACTTGATGCCACCTTGTTTGCCAAC
LOC_Os12g40780
Os.51731.1.S1_at--678--8391Chr12:25212451..25212475 (25 bp)
GGCGCAGCTCTCAGTTTCATGAAGG
LOC_Os12g40780
Os.51731.1.S1_at--421--5531Chr12:25212608..25212632 (25 bp)
GAAACTTGACCCCATGAGCGACGAG
LOC_Os12g40780
Os.51731.1.S1_at--893--1351Chr12:25212797..25212821 (25 bp)
AGAGAGCTGCTTGATCTGAAGATCC
LOC_Os12g40780
Os.51731.1.S1_at--719--551Chr12:25212818..25212842 (25 bp)
ATCCGAATAACCCTTGAGCAGCTAC
LOC_Os12g40780
Os.51731.1.S1_at--42--4911Chr12:25212880..25212904 (25 bp)
GCTTCACATCTTTCCACTGTAACTA
LOC_Os12g40780
Os.51731.1.S1_at--702--5731Chr12:25212933..25212957 (25 bp)
GACTGTTTAGCTATCTCTGCTGTCA
LOC_Os12g40780
Os.51731.1.S1_at--413--5491Chr12:25212973..25212997 (25 bp)
GAACATGCACTGTCTTTCGGTCAGA
LOC_Os12g40780
Os.51731.1.S1_at--1107--2631Chr12:25212998..25213022 (25 bp)
AACCATATGGTTTGCTAGGTCATCA
LOC_Os12g40780
Os.51731.1.S1_at--631--7131Chr12:25213016..25213040 (25 bp)
GTCATCATCACCCATACATATGCAG
LOC_Os12g40780
Os.51731.1.S1_at--296--2051Chr12:25213045..25213069 (25 bp)
ACTTTCTTCCATTTTGTGCGCAACT
LOC_Os12g40780
Target Sequence 
ACTTGATGCCACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGGCAGCGAGAAGGGGACAGAGCTTTACTGGATGCAC
AGCAGTGCAGGATGCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTAC
AAAGGAGCAGTGGACGCATTCGGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGAACGCGTTAAGGGAGGC
GATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATAACCCTTGAGCAGCTACTGCATCGTCCTTTTGGCCTC
ACCTCACCTGTCAGACTGCTTCACATCTTTCCACTGTAACTACCAACGACTAGGTTTTGCAAACCATGCTGACTGTTTAG
CTATCTCTGCTGTCAGAGTACGTATGGCAGGAACATGCACTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCA
TCACCCATACATATGCAGTTGCACTTTCTTCCATTTTGTGCGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis