Browse Element(s) Details


Os.18059.1.S1_at

Description gb:AK101252.1
DB_XREF= gi:32986461
TID=Os.18059.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032F05, full insert sequence.
FL= gb:AK101252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4077010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005515molecular_functionprotein binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18059.1.S1_at--917--5411Chr12:25206486..25206510 (25 bp)
GAAGCGCTGAAACTTGACCCTGAGA
LOC_Os12g40770
Os.18059.1.S1_at--941--9051Chr12:25206729..25206753 (25 bp)
TGCATCAGTGCATCACCCTTTTGAC
LOC_Os12g40770
Os.18059.1.S1_at--1139--6411Chr12:25206780..25206804 (25 bp)
GATCTCACATTCTCTCTACGTGTAA
LOC_Os12g40770
Os.18059.1.S1_at--559--9911Chr12:25206796..25206820 (25 bp)
TACGTGTAACTACCAACGGCCTGTT
LOC_Os12g40770
Os.18059.1.S1_at--980--2551Chr12:25206835..25206859 (25 bp)
AACTGTTTAGCTGATCACCATGCAT
LOC_Os12g40770
Os.18059.1.S1_at--841--4971Chr12:25206856..25206880 (25 bp)
GCATCTGTGTCCTTTGGTCGAAAAA
LOC_Os12g40770
Os.18059.1.S1_at--504--291Chr12:25206938..25206962 (25 bp)
ATAGTTTCCTGTTAGTTTCCTGTAG
LOC_Os12g40770
Os.18059.1.S1_at--1028--8711Chr12:25206976..25207000 (25 bp)
TGTCGATACATATTGCAGCTGCACT
LOC_Os12g40770
Os.18059.1.S1_at--288--10251Chr12:25207010..25207034 (25 bp)
TTTGTGTGCGACTCTAATGCAAGCG
LOC_Os12g40770
Os.18059.1.S1_at--331--5171Chr12:25207028..25207052 (25 bp)
GCAAGCGCAGACTGGCAGCATGATA
LOC_Os12g40770
Os.18059.1.S1_at--68--7071Chr12:25207069..25207093 (25 bp)
GTGAAGTCCGGCAGTTTCAGTATTC
NONE
Target Sequence 
GAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGC
ACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGA
CTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATNTAAACTGTTTAGCT
GATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTT
GAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTT
CCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAGTCCGGCAGTTTC
AGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis