Browse Element(s) Details


Os.57207.1.S1_s_at

Description gb:AK111139.1
DB_XREF= gi:32996348
TID=Os.57207.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D12, full insert sequence.
FL= gb:AK111139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4076011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40720OsAffx.32123.1.S1_at11/1112+25173956..25177221hypothetical protein
LOC_Os12g40720OsAffx.28164.2.S1_at1/1112+25173956..25177221hypothetical protein
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57207.1.S1_s_at--378--4551Chr12:25201773..25201797 (25 bp)
GCGCCCTGGAACAGAATCCCAGCAG
LOC_Os12g40760
Os.57207.1.S1_s_at--1084--9131Chr12:25201848..25201872 (25 bp)
TGCGGTCGTGCCTGCAGCTGTACGC
LOC_Os12g40760
Os.57207.1.S1_s_at--765--1151Chr12:25201950..25201974 (25 bp)
AGTCGGCGCAGTACGTCTCTCTGGG
LOC_Os12g40760
Os.57207.1.S1_s_at--864--10651Chr12:25202016..25202040 (25 bp)
TTCCCCGCGAGAACGAGCGGTTCAG
LOC_Os12g40760
Os.57207.1.S1_s_at--650--1631Chr12:25202031..25202055 (25 bp)
AGCGGTTCAGCGTCATGGCCATCGT
LOC_Os12g40760
Os.57207.1.S1_s_at--351--9231Chr12:25202075..25202099 (25 bp)
TCCATGCTGGGACCCTAGCTAATTA
LOC_Os12g40760
Os.57207.1.S1_s_at--674--3131Chr12:25202095..25202119 (25 bp)
AATTAATTACTCAATGGCCCTTCGC
LOC_Os12g40760
Os.57207.1.S1_s_at--148--4551Chr12:25202111..25202135 (25 bp)
GCCCTTCGCCTTTGTAATTAATTAG
LOC_Os12g40760
Os.57207.1.S1_s_at--557--9751Chr12:25202139..25202163 (25 bp)
TAATCAGTTGATTAGGCCACCTGGT
LOC_Os12g40760
Os.57207.1.S1_s_at--938--871Chr12:25202152..25202176 (25 bp)
AGGCCACCTGGTTAGAGTTAATCCG
LOC_Os12g40760
Os.57207.1.S1_s_at--467--7851Chr12:25202161..25202185 (25 bp)
GGTTAGAGTTAATCCGTGCAATAAT
LOC_Os12g40760
Target Sequence 
GCGCCCTGGAACAGAATCCCAGCAGCAGCAGCAACGGCACGGCGGCGGCGGCGGCGGCGGCGAGGAGGCAGGGGATGCGG
TCGTGCCTGCAGCTGTACGCCGGGGCGGTGCCGGCGCTGGAGTGGGCGGCGCGGTCGGTGTCCGCCGGGCGGTACCGCGG
CGCGCGGGAGGTGCTCCAGTCGGCGCAGTACGTCTCTCTGGGGTGCGAGGGCATGGCCGGCGGCGGCGGCGGCGCGGCGG
CGCTTCCCCGCGAGAACGAGCGGTTCAGCGTCATGGCCATCGTCGCGCACGCCGTCGTCGCCTCCATGCTGGGACCCTAG
CTAATTAATTACTCAATGGCCCTTCGCCTTTGTAATTAATTAGTATTAATCAGTTGATTAGGCCACCTGGTTAGAGTTAA
TCCGTGCAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57207.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis