Browse Element(s) Details


OsAffx.32123.1.S1_at

Description tigr:9640.m03983
TID=OsAffx.32123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4072011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40680Os.28943.1.S1_x_at4/1112+25150113..25152317retrotransposon protein, putative, unclassified
LOC_Os12g40690NANA12+25152937..25158833retrotransposon protein, putative, unclassified
LOC_Os12g40700Os.46306.1.S1_x_at6/1112+25160060..25164527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40710OsAffx.7844.1.S1_at10/1112+25168554..25170761Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40710OsAffx.7844.1.S1_x_at10/1112+25168554..25170761Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40720OsAffx.32123.1.S1_at11/1112+25173956..25177221hypothetical protein
LOC_Os12g40720OsAffx.28164.2.S1_at1/1112+25173956..25177221hypothetical protein
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32123.1.S1_at--906--1511Chr12:25174184..25174208 (25 bp)
AGCAGTCAACCCTCGATGCAATCTA
LOC_Os12g40720
OsAffx.32123.1.S1_at--989--8071Chr12:25174262..25174286 (25 bp)
GGACCGGTCGTCGAAACTCGGCTAG
LOC_Os12g40720
OsAffx.32123.1.S1_at--774--10231Chr12:25174466..25174490 (25 bp)
TTTGGATTTCCCGATATTCCTATCA
LOC_Os12g40720
OsAffx.32123.1.S1_at--332--91Chr12:25174481..25174505 (25 bp)
ATTCCTATCAATACTCTGGCTTTCA
LOC_Os12g40720
OsAffx.32123.1.S1_at--793--2751Chr12:25174505..25174529 (25 bp)
AAGACCGACTCTTTGAACTACTCAG
LOC_Os12g40720
OsAffx.32123.1.S1_at--288--9911Chr12:25174523..25174547 (25 bp)
TACTCAGACTTCCATGCATCCATGT
LOC_Os12g40720
OsAffx.32123.1.S1_at--208--4991Chr12:25174538..25174562 (25 bp)
GCATCCATGTGCTTTGCTATAGCGA
LOC_Os12g40720
OsAffx.32123.1.S1_at--951--5011Chr12:25175701..25175723 (23 bp)
GCAGGTGTAACTGGCTGGTGCATAC
LOC_Os12g40720
OsAffx.32123.1.S1_at--35--3911Chr12:25175713..25175737 (25 bp)
CTGGTGCATACAGCGCAGCGATATC
LOC_Os12g40720
OsAffx.32123.1.S1_at--189--9911Chr12:25175774..25175798 (25 bp)
TACTGCTCGGGATATGCTGGCGGCC
LOC_Os12g40720
OsAffx.32123.1.S1_at--620--6031Chr12:25175807..25175831 (25 bp)
GAGATCCTCTGCTGGGAGAGCCGCA
LOC_Os12g40720
Target Sequence 
AGCAGTCAACCCTCGATGCAATCTACCATCACCCACACTCCTCTGCTGCATCGACCAGAACCGGCCAAGGCGGCCAAGGG
ACCGGTCGTCGAAACTCGGCTAGCCACCGTCGCCACAAGCGCCCGCAGCCCTGCTGCACCGCCGCCAAGGCCGGTGGGCG
CAGCTGGAGGCTGCCACCGCTCCGCCCCCTGGATCATTTGGGACTTCCATATTGAAAGGAATATAATTTTTCCCCCAGAT
TTCGTCGTATACAAATATATGAAAACAAGTCCAATTTGCAATTTTGGATTTCCCGATATTCCTATCAATACTCTGGCTTT
CAAGACCGACTCTTTGAACTACTCAGACTTCCATGCATCCATGTGCTTTGCTATAGCGAAAGTTACCATTAGAGCAGGTG
TAACTGGCTGGTGCATACAGCGCAGCGATATCGGCGGCGGTGACGCGGCATCTCCGGCGAAGGAGGTCTACTGCTCGGGA
TATGCTGGCGGCCTGCAGCAAGAGATCCTCTGCTGGGAGAGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis