Browse Element(s) Details


OsAffx.7844.1.S1_x_at

Description tigr:9640.m03982
TID=OsAffx.7844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4071010/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40670NANA12+25145244..25147347retrotransposon protein, putative, unclassified
LOC_Os12g40680Os.28943.1.S1_x_at4/1112+25150113..25152317retrotransposon protein, putative, unclassified
LOC_Os12g40690NANA12+25152937..25158833retrotransposon protein, putative, unclassified
LOC_Os12g40700Os.46306.1.S1_x_at6/1112+25160060..25164527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40710OsAffx.7844.1.S1_at10/1112+25168554..25170761Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40710OsAffx.7844.1.S1_x_at10/1112+25168554..25170761Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40720OsAffx.32123.1.S1_at11/1112+25173956..25177221hypothetical protein
LOC_Os12g40720OsAffx.28164.2.S1_at1/1112+25173956..25177221hypothetical protein
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7844.1.S1_x_at--903--1451Chr12:25169098..25169122 (25 bp)
AGAAGGCATCATCAGCGGCAGGAAA
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--318--8151Chr12:25169118..25169142 (25 bp)
GGAAAAGCAAGCAGGCATCGCCACG
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--322--2351Chr12:25169121..25169145 (25 bp)
AAAGCAAGCAGGCATCGCCACGCTG
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--385--5171Chr12:25169124..25169148 (25 bp)
GCAAGCAGGCATCGCCACGCTGCAG
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--949--1891Chr12:25169305..25169329 (25 bp)
ACGTCTCGTCCCAGGATGCGATAAT
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--447--7171Chr12:25169307..25169331 (25 bp)
GTCTCGTCCCAGGATGCGATAATAA
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--855--9411Chr12:25169310..25169332 (23 bp)
TCGTCCCAGGATGCGATAATAAGTC
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--283--6451NONE
GATAATAAGTCGAACCAGGCGTCAA
NONE
OsAffx.7844.1.S1_x_at--498--3071Chr12:25170304..25170324 (21 bp)
AATAAGTCGAACCAGGCGTCAACGC
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--800--6351Chr12:25170503..25170527 (25 bp)
GATGCCTGCCGGGATGGTTCTTGCT
LOC_Os12g40710
OsAffx.7844.1.S1_x_at--31--3391Chr12:25170674..25170698 (25 bp)
CAGCGTTGCAGCTCGTCGACATGGA
LOC_Os12g40710
Target Sequence 
AGAAGGCATCATCAGCGGCAGGAAAAGCAAGCAGGCATCGCCACGCTGCAGGAGCTCACAACCTTACAGAAAAAAGGCGG
AGGTTCAAGATAACTGAGAGGTTCAGGACGCTGCAACGTCTCGTCCCAGGATGCGATAATAAGTCGAACCAGGCGTCAAC
GCTGGACCAGACAATCCAGTACATGAAGTCGCTGCAGCACCAGCTCGAGGCCACGTCCGCCGTCGGCTCGCCGGCGGCGG
CGGTTCTGTACCCCGCCGCCGTGCACCCGCAGTCGTACATGCATCCACCGGCGCCGCCGCCACCGGTGGCCGGAGCGGCG
GCGCCGGTCACGATGGCGCCGATGCCTGCCGGGATGGTTCTTGCTGCTGCTCCTCCGGGGGCGGCGCCGCCGCCCGGCCC
TCCGGCGACGATGATGCCGTTCGGAGCTATGCTCCCTTACCCTCCCTACCCGGAGGTGCTGCTGCCGCCGCCGCCGGCGA
CGCTGTACGGACGGCCGCCGGCCGCCGCTCCCAGCGTTGCAGCTCGTCGACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7844.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis