Browse Element(s) Details


Os.26794.1.S2_at

Description gb:AK122147.1
DB_XREF= gi:37991793
TID=Os.26794.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.26794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138G15, full insert sequence.
FL= gb:AK102932.1 gb:AK122147.1 gb:AK102450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4079011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein
LOC_Os12g40810NANA12+25226095..25232085retrotransposon protein, putative, unclassified
LOC_Os12g40820NANA12+25232713..25235991retrotransposon protein, putative, unclassified
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26794.1.S2_at--515--1591Chr12:25214677..25214701 (25 bp)
AGCTCGCACCTTGCAGACTGTGGTC
LOC_Os12g40790
Os.26794.1.S2_at--566--811Chr12:25214628..25214652 (25 bp)
ATGGTGATATCCTACGGGCGGCCAA
LOC_Os12g40790
Os.26794.1.S2_at--1129--8431Chr12:25214609..25214633 (25 bp)
GGCCAAAGGCCGCATAGTCTTGAAA
LOC_Os12g40790
Os.26794.1.S2_at--615--5771Chr12:25214556..25214580 (25 bp)
GACGATCACCGGATTTGGCACAAGG
LOC_Os12g40790
Os.26794.1.S2_at--1107--5091Chr12:25214539..25214563 (25 bp)
GCACAAGGTCGTGAAGTTCCGCCAC
LOC_Os12g40790
Os.26794.1.S2_at--1153--4391Chr12:25214519..25214543 (25 bp)
GCCACCCGGGAAAACATATCACCAT
LOC_Os12g40790
Os.26794.1.S2_at--1150--2671Chr12:25214446..25214470 (25 bp)
AAGCGGCTGTGCCATACTCAAAGCT
LOC_Os12g40790
Os.26794.1.S2_at--733--51Chr12:25214409..25214433 (25 bp)
ATTGATGCTGTTGAATGCTGCTCCA
LOC_Os12g40790
Os.26794.1.S2_at--91--631Chr12:25214395..25214419 (25 bp)
ATGCTGCTCCATTCTGGCAGAATTT
LOC_Os12g40790
Os.26794.1.S2_at--425--2991Chr12:25214265..25214289 (25 bp)
AATGTCAGTTTTAGCTGCTCTTCCC
LOC_Os12g40790
Os.26794.1.S2_at--1015--3371Chr12:25214201..25214225 (25 bp)
CAGCTTGGTTGTATCCTGGATTAAT
LOC_Os12g40790
Target Sequence 
AGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCG
CATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCACCGGATTTGGCACAAGGTCGTGAAGTTCCGC
CACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTG
TGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAGTTTTTTTT
TTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAA
AGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAG
CTTGGTTGTATCCTGGATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26794.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis