Browse Element(s) Details


OsAffx.20066.1.S1_at

Description tigr:9640.m04015
TID=OsAffx.20066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4104011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40990OsAffx.20065.1.S1_at8/1112+25333243..25335275hypothetical protein
LOC_Os12g41000NANA12+25337542..25343357retrotransposon protein, putative, unclassified
LOC_Os12g41010NANA12+25343985..25347266retrotransposon protein, putative, unclassified
LOC_Os12g41020NANA12+25348084..25349022retrotransposon protein, putative, unclassified
LOC_Os12g41030NANA12+25351562..25351984AP2 domain containing protein, expressed
LOC_Os12g41040OsAffx.20066.1.S1_at11/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.47463.1.S1_x_at3/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.14491.2.S1_x_at2/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41050NANA12+25374216..25376181hypothetical protein
LOC_Os12g41060OsAffx.7849.1.S1_at11/1112+25381958..25385125AP2 domain containing protein, expressed
LOC_Os12g41070OsAffx.7850.1.S1_at11/1112+25387250..25387621hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20066.1.S1_at--15--9731Chr12:25359040..25359088 (25 bp)
TAAGAGACACGATCGGGACGTTCGA
LOC_Os12g41040
OsAffx.20066.1.S1_at--961--2151Chr12:25358981..25359005 (25 bp)
ACAGCGCGATGGCTCTACGGCAGCA
LOC_Os12g41040
OsAffx.20066.1.S1_at--266--8491Chr12:25358972..25358996 (25 bp)
TGGCTCTACGGCAGCAAGGCCGTGA
LOC_Os12g41040
OsAffx.20066.1.S1_at--551--1311Chr12:25358851..25358875 (25 bp)
AGATGGACAAGCAGGTAGCTCCGGC
LOC_Os12g41040
OsAffx.20066.1.S1_at--722--8251Chr12:25358814..25358838 (25 bp)
GGCAGAGACAGTAGCCGCAGACCCC
LOC_Os12g41040
OsAffx.20066.1.S1_at--735--1231Chr12:25358779..25358803 (25 bp)
AGTTGGGTCCAGTGGTGCTTTGTCA
LOC_Os12g41040
OsAffx.20066.1.S1_at--101--7791Chr12:25358774..25358798 (25 bp)
GGTCCAGTGGTGCTTTGTCATGAAC
LOC_Os12g41040
OsAffx.20066.1.S1_at--1124--4871Chr12:25358763..25358787 (25 bp)
GCTTTGTCATGAACTGGAGGCCACC
LOC_Os12g41040
OsAffx.20066.1.S1_at--813--8551Chr12:25358749..25358773 (25 bp)
TGGAGGCCACCAACGGCTGGCAGTA
LOC_Os12g41040
OsAffx.20066.1.S1_at--677--3911Chr12:25358733..25358757 (25 bp)
CTGGCAGTACGAGGCGTACGGCTAC
LOC_Os12g41040
OsAffx.20066.1.S1_at--1132--4911Chr12:25358685..25358709 (25 bp)
GCTTGAGAACTACGCGTACGCCGGC
LOC_Os12g41040
Target Sequence 
TAAGAGACACGATCGGGACGTTCGACACGGCGGTGGAGGCGGCGCTGGCCTACGACGCCACAGCGCGATGGCTCTACGGC
AGCAAGGCCGTGACCAACTTCCCCACCACCACCGGCGATGGTGACGACGGCCTCCCGGTTGCTGAACCCGCCGTCGTCGT
CGTTGCCGCTCCCGCCTTCGCCGGCGAGGAGATGGACAAGCAGGTAGCTCCGGCGGCGGCGACGGCGGCAGAGACAGTAG
CCGCAGACCCCGGCGCCGGCGAGTTGGGTCCAGTGGTGCTTTGTCATGAACTGGAGGCCACCAACGGCTGGCAGTACGAG
GCGTACGGCTACGGCTACAGCATGGGGCTGGAGCTGCTTGAGAACTACGCGTACGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis