Browse Element(s) Details


OsAffx.20067.1.S1_s_at

Description tigr:9640.m04020
TID=OsAffx.20067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable protein kinase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4109011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41070OsAffx.7850.1.S1_at11/1112+25387250..25387621hypothetical protein
LOC_Os12g41080NANA12+25400530..25404876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41090OsAffx.20067.1.S1_s_at11/1112+25411151..25412669Protein kinase domain containing protein, expressed
LOC_Os12g41100NANA12+25423105..25424464transposon protein, putative, unclassified
LOC_Os12g41110Os.9585.1.S1_s_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41110Os.9585.1.S1_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41120OsAffx.7851.1.S1_at11/1112+25432148..25432603hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20067.1.S1_s_at--331--6711Chr12:25411599..25411623 (25 bp)
GTTCGGCGAACACGACAAGAGCCTA
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--535--1371Chr12:25411582..25411606 (25 bp)
AGAGCCTAAGGGAGAAGCGGTTCAC
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--19--4291Chr12:25411578..25411602 (25 bp)
CCTAAGGGAGAAGCGGTTCACGACG
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--35--7731Chr12:25411471..25411495 (25 bp)
GGGTGGAGTGCTTGCCGCTGGCGGG
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--649--8751Chr12:25411278..25411302 (25 bp)
TGTAGTTAGGGCTTGGCATAGTTGT
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--969--4931Chr12:25411268..25411292 (25 bp)
GCTTGGCATAGTTGTGAGGATTTGT
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--810--3571Chr12:25411262..25411286 (25 bp)
CATAGTTGTGAGGATTTGTGTGAAA
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--524--4871Chr12:25411226..25411250 (25 bp)
GTTTGTAAATGGCAAGGGACTCTTT
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--170--5171Chr12:25411215..25411239 (25 bp)
GCAAGGGACTCTTTTGTAGTTTGGA
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--681--5711Chr12:25411209..25411233 (25 bp)
GACTCTTTTGTAGTTTGGAGATGTA
LOC_Os12g41090
OsAffx.20067.1.S1_s_at--502--5191Chr12:25411171..25411195 (25 bp)
GCAATGTATGAATGCTAGATTTATT
LOC_Os12g41090
Target Sequence 
GTTCGGCGAACACGACAAGAGCCTAAGGGAGAAGCGGTTCACGACGACGGCGTCGCCGGAGAAGACGCTGGAGCAGCTCG
GCCTCGCCGGCGGGAAGCTCGGGTACGTGGTGGTGGTGGGGAAGAAAGGGGTGGAGTGCTTGCCGCTGGCGGGGGGGCGG
CTGTCGTCGGGGATCGCCGCGATGTCGGTGGAGATGTCGGAGGTGGCGCCGCCGCTGTTGCTCGTCGAGCTGAGGCTGGA
GGTCGCCGCCGGCGACGTCGACGGCGGCGACGGCGAGGTGAAGGGGTTTGGGTGGGAGCAGCTGAGAATGGAGCTAGGTG
ATGTAGTTAGGGCTTGGCATAGTTGTGAGGATTTGTGTGAAATTTAGGGGGGTGTTTGTAAATGGCAAGGGACTCTTTTG
TAGTTTGGAGATGTAATTGTATAATATAGCAATGTATGAATGCTAGATTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20067.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis