Browse Element(s) Details


OsAffx.20103.1.S1_at

Description tigr:9640.m04272
TID=OsAffx.20103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4340010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43359NANA12+26868077..26868689NA
LOC_Os12g43370Os.12322.1.S1_at11/1112+26872692..26876424Methionine aminopeptidase 2, putative, expressed
LOC_Os12g43380Os.6867.1.S1_x_at11/1112+26879510..26880232Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43390NANA12+26888574..26889098Thaumatin-like protein precursor, putative
LOC_Os12g43400OsAffx.20103.1.S1_at10/1112+26890545..26891096hypothetical protein
LOC_Os12g43410Os.6867.1.S1_x_at3/1112+26898672..26899691Thaumatin-like protein precursor, putative
LOC_Os12g43430Os.49466.1.S1_at11/1112+26913303..26914097Thaumatin-like protein precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20103.1.S1_at--497--6231Chr12:26890609..26890633 (25 bp)
GATGGCTCAGGCCAGATACAGCGGG
LOC_Os12g43400
OsAffx.20103.1.S1_at--183--7591Chr12:26890632..26890656 (25 bp)
GGGCTCGACTACGTCAATGATCGAT
LOC_Os12g43400
OsAffx.20103.1.S1_at--523--2991NONE
AATGATCGATGGAGAGACCCGCCTA
NONE
OsAffx.20103.1.S1_at--237--9391Chr12:26890652..26890979 (25 bp)
TCGATGGAGAGACCCGCCTAAAAAT
LOC_Os12g43400
OsAffx.20103.1.S1_at--657--6011Chr12:26890962..26890985 (24 bp)
GAGAGACCCGCCTAAAAATCTAGTT
LOC_Os12g43400
OsAffx.20103.1.S1_at--324--2451Chr12:26890975..26890999 (25 bp)
AAAATCTAGTTTTACATGTGGGTGT
LOC_Os12g43400
OsAffx.20103.1.S1_at--538--10471Chr12:26890986..26891010 (25 bp)
TTACATGTGGGTGTGAAACCACCAG
LOC_Os12g43400
OsAffx.20103.1.S1_at--505--5531Chr12:26891000..26891024 (25 bp)
GAAACCACCAGGGAAAATTGTCTAT
LOC_Os12g43400
OsAffx.20103.1.S1_at--550--7151Chr12:26891019..26891043 (25 bp)
GTCTATTTTGACATGCCTTGGATCA
LOC_Os12g43400
OsAffx.20103.1.S1_at--921--8951Chr12:26891027..26891051 (25 bp)
TGACATGCCTTGGATCATCGGCGAC
LOC_Os12g43400
OsAffx.20103.1.S1_at--854--3531Chr12:26891030..26891054 (25 bp)
CATGCCTTGGATCATCGGCGACGCG
LOC_Os12g43400
Target Sequence 
GATGGCTCAGGCCAGATACAGCGGGGCTCGACTACGTCAATGATCGATGGAGAGACCCGCCTAAAAATCTAGTTTTACAT
GTGGGTGTGAAACCACCAGGGAAAATTGTCTATTTTGACATGCCTTGGATCATCGGCGACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis