Browse Element(s) Details


Os.12322.1.S1_at

Description gb:AK122063.1
DB_XREF= gi:37991709
TID=Os.12322.1
CNT=95
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115K11, full insert sequence.
FL= gb:AK122063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4337011/11Methionine aminopeptidase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43320OsAffx.20101.1.S1_at11/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_x_at3/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_at2/1112+26848776..26849141hypothetical protein
LOC_Os12g43330OsAffx.20102.1.S1_at11/1112+26853476..26853817hypothetical protein
LOC_Os12g43340Os.39257.1.S1_at11/1112+26855164..26856653Actin-depolymerizing factor, putative, expressed
LOC_Os12g43350Os.54199.1.S1_at11/1112+26861456..26862809expressed protein
LOC_Os12g43359NANA12+26868077..26868689NA
LOC_Os12g43370Os.12322.1.S1_at11/1112+26872692..26876424Methionine aminopeptidase 2, putative, expressed
LOC_Os12g43380Os.6867.1.S1_x_at11/1112+26879510..26880232Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43390NANA12+26888574..26889098Thaumatin-like protein precursor, putative
LOC_Os12g43400OsAffx.20103.1.S1_at10/1112+26890545..26891096hypothetical protein
LOC_Os12g43410Os.6867.1.S1_x_at3/1112+26898672..26899691Thaumatin-like protein precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12322.1.S1_at--370--731Chr12:26875809..26875833 (25 bp)
ATGTTGGACATGTACCTCTGAGGGT
LOC_Os12g43370
Os.12322.1.S1_at--20--191Chr12:26875872..26875896 (25 bp)
ATTTCGGAACGCTTGCTTTTTGTCG
LOC_Os12g43370
Os.12322.1.S1_at--328--9891Chr12:26875901..26875925 (25 bp)
TACTTGGACCGCCTTGGTGAGACCA
LOC_Os12g43370
Os.12322.1.S1_at--667--6611Chr12:26875958..26876065 (25 bp)
GTTGGTATTGTTCAGCCGTATCCTC
LOC_Os12g43370
Os.12322.1.S1_at--626--4031Chr12:26876057..26876081 (25 bp)
CGTATCCTCCATTGTGCGACGTGAG
LOC_Os12g43370
Os.12322.1.S1_at--830--7091Chr12:26876094..26876118 (25 bp)
GTCACAATTTGAGCACACCATCTTA
LOC_Os12g43370
Os.12322.1.S1_at--248--8391Chr12:26876152..26876176 (25 bp)
GGCGACGACTACTGATTGCGGCTGT
LOC_Os12g43370
Os.12322.1.S1_at--1128--3831Chr12:26876170..26876194 (25 bp)
CGGCTGTAGCTTGTCATGTACCGGT
LOC_Os12g43370
Os.12322.1.S1_at--872--6031Chr12:26876202..26876226 (25 bp)
GAGATCATTGTGCACCATTCTGGGC
LOC_Os12g43370
Os.12322.1.S1_at--759--10591Chr12:26876219..26876243 (25 bp)
TTCTGGGCAACCTGTGTACTATCAT
LOC_Os12g43370
Os.12322.1.S1_at--540--2531Chr12:26876332..26876356 (25 bp)
AACTATCTGTTGTCTTTCTTGAAAC
LOC_Os12g43370
Target Sequence 
ATGTTGGACATGTACCTCTGAGGGTNNCAAAGGCTAAGCAACTACTTGGAACGATTAACAACAATTTCGGAACGCTTGCT
TTTTGTCGCCGGTACTTGGACCGCCTTGGTGAGACCAAGTATCTCATGGCACTGAAAAATCTATGCGACGTTGGTATTGT
TCAGCCGTATCCTCCATTGTGCGACGTGAGGGGAAGCTATGTGTCACAATTTGAGCACACCATCTTACTCCGGCCAACCT
GCAAGGAAGTCATATCCAGAGGCGACGACTACTGATTGCGGCTGTAGCTTGTCATGTACCGGTTGTTTGTGAGATCATTG
TGCACCATTCTGGGCAACCTGTGTACTATCATGCTATGTATGGGATCATATGGCGGAATCATCAGATAAATAATCGAGAG
ACGTTTTCAGTTTTTTGTTTTGTTGTTTACACGAGATACCAACTATCTGTTGTCTTTCTTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis