Browse Element(s) Details


OsAffx.20102.1.S1_at

Description tigr:9640.m04264
TID=OsAffx.20102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4333011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43270NANA12+26824462..26831682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43280Os.46995.1.S1_x_at1/1112+26832354..26835281retrotransposon protein, putative, unclassified
LOC_Os12g43290OsAffx.20100.2.S1_x_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.2.S1_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.1.S1_x_at7/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.3.S1_x_at4/1112+26836241..26838552hypothetical protein
LOC_Os12g43300OsAffx.7878.1.S1_at10/1112+26839657..26844602hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_x_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43320OsAffx.20101.1.S1_at11/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_x_at3/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_at2/1112+26848776..26849141hypothetical protein
LOC_Os12g43330OsAffx.20102.1.S1_at11/1112+26853476..26853817hypothetical protein
LOC_Os12g43340Os.39257.1.S1_at11/1112+26855164..26856653Actin-depolymerizing factor, putative, expressed
LOC_Os12g43350Os.54199.1.S1_at11/1112+26861456..26862809expressed protein
LOC_Os12g43359NANA12+26868077..26868689NA
LOC_Os12g43370Os.12322.1.S1_at11/1112+26872692..26876424Methionine aminopeptidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20102.1.S1_at--549--5411Chr12:26853566..26853590 (25 bp)
GACTACGGAATGCTCAACTACCGAC
LOC_Os12g43330
OsAffx.20102.1.S1_at--645--5231Chr12:26853573..26853597 (25 bp)
GAATGCTCAACTACCGACCGGCCGG
LOC_Os12g43330
OsAffx.20102.1.S1_at--945--10631Chr12:26853623..26853647 (25 bp)
TTCGCCATGTACGAGCCGATGATCA
LOC_Os12g43330
OsAffx.20102.1.S1_at--330--8751Chr12:26853630..26853654 (25 bp)
TGTACGAGCCGATGATCATCGTGTT
LOC_Os12g43330
OsAffx.20102.1.S1_at--1118--6631Chr12:26853691..26853715 (25 bp)
GTTGAGCAAGCTTTTACCGTATGTT
LOC_Os12g43330
OsAffx.20102.1.S1_at--408--1791Chr12:26853706..26853730 (25 bp)
ACCGTATGTTCGTGCGCGTTTGCAC
LOC_Os12g43330
OsAffx.20102.1.S1_at--1162--10611Chr12:26853714..26853738 (25 bp)
TTCGTGCGCGTTTGCACTTGCTGCG
LOC_Os12g43330
OsAffx.20102.1.S1_at--231--2071Chr12:26853729..26853753 (25 bp)
ACTTGCTGCGGCTGCCTGATTATTA
LOC_Os12g43330
OsAffx.20102.1.S1_at--1065--4691Chr12:26853736..26853760 (25 bp)
GCGGCTGCCTGATTATTATTGCATA
LOC_Os12g43330
OsAffx.20102.1.S1_at--296--10211Chr12:26853749..26853773 (25 bp)
TATTATTGCATATACGCGCACTTGT
LOC_Os12g43330
OsAffx.20102.1.S1_at--1151--231Chr12:26853758..26853782 (25 bp)
ATATACGCGCACTTGTTTTGGACAG
LOC_Os12g43330
Target Sequence 
GACTACGGAATGCTCAACTACCGACCGGCCGGCTGCGACGACGACGGCGGCGGCGGCTTCGCCATGTACGAGCCGATGAT
CATCGTGTTCACGGTGGTGGTGTATTTGGCGGTGTGGCTCTACGGGTTGAGCAAGCTTTTACCGTATGTTCGTGCGCGTT
TGCACTTGCTGCGGCTGCCTGATTATTATTGCATATACGCGCACTTGTTTTGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis