Browse Element(s) Details


OsAffx.20100.2.S1_x_at

Description tigr:9640.m04260
TID=OsAffx.20100.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4329011/11hypothetical protein
LOC_Os12g4306010/11retrotransposon protein, putative, unclassified
LOC_Os04g331209/11retrotransposon protein, putative, unclassified
LOC_Os11g156404/11Zinc knuckle family protein
LOC_Os03g054103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43250NANA12+26812941..26814767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g43260NANA12+26817317..26819936hypothetical protein
LOC_Os12g43270NANA12+26824462..26831682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43280Os.46995.1.S1_x_at1/1112+26832354..26835281retrotransposon protein, putative, unclassified
LOC_Os12g43290OsAffx.20100.2.S1_x_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.2.S1_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.1.S1_x_at7/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.3.S1_x_at4/1112+26836241..26838552hypothetical protein
LOC_Os12g43300OsAffx.7878.1.S1_at10/1112+26839657..26844602hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_x_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43320OsAffx.20101.1.S1_at11/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_x_at3/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_at2/1112+26848776..26849141hypothetical protein
LOC_Os12g43330OsAffx.20102.1.S1_at11/1112+26853476..26853817hypothetical protein
LOC_Os12g43340Os.39257.1.S1_at11/1112+26855164..26856653Actin-depolymerizing factor, putative, expressed
LOC_Os12g43350Os.54199.1.S1_at11/1112+26861456..26862809expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20100.2.S1_x_at--129--6273Chr12:26712870..26712894 (25 bp)
GATGTGCTCTAGAAGCTGTGGATAC
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--1026--3173Chr12:26836913..26836937 (25 bp)
AATTGGCTAGGATAAATCTGTTCTT
LOC_Os12g43290
OsAffx.20100.2.S1_x_at--860--6315Chr12:26713007..26713031 (25 bp)
GATGAAGTCTTACATTCAGATGATT
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--9--6935Chr12:26713032..26713056 (25 bp)
GTATGTCTGATTTTGATTATGCTGA
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--187--2114Chr12:26713059..26713083 (25 bp)
ACATGTTGAGGCTTTCTCAAAGCAA
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--90--2834Chr12:26713274..26713298 (25 bp)
AAGTTGATTTCATTGGCATCCAAGA
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--189--34Chr12:26713285..26713309 (25 bp)
ATTGGCATCCAAGAAACTGTGAAGC
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--92--2394Chr12:26713298..26713322 (25 bp)
AAACTGTGAAGCAGGATTTCACTGC
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--27--7955Chr12:26713311..26713335 (25 bp)
GGATTTCACTGCTAAAGACTTGGAT
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--1040--1193Chr12:26713360..26713384 (25 bp)
AGTTGGAATTGGACCATTCCCAGGG
LOC_Os12g43060
OsAffx.20100.2.S1_x_at--610--8334Chr12:26713524..26713548 (25 bp)
GGCTGCCCAGCCTGAACACAAGGAG
LOC_Os12g43060
Target Sequence 
GATGTGCTCTAGAAGCTGTGGATACAAATCTGGAATTGGCTAGGATAAATCTGTTCTTGAAAGAGAAACTAAATACTTCT
CAGAAAGGGGAGTGTGAAAATGTTAGGGAGAACTTGAGTGACATAGACATAAATATAGATGAAGTCTTACATTCAGATGA
TTGTATGTCTGATTTTGATTATGCTGAAAACATGTTGAGGCTTTCTCAAAGCAATTCATCAGGAAAAAAGAGGAGGAAAA
ATAACAGAGGAAACCTTGAGATTTTCAAGCATAAAGTTGATTTCATTGGCATCCAAGAAACTGTGAAGCAGGATTTCACT
GCTAAAGACTTGGATTTAATAGGAGGAGGGGGTAAGTTTAGTTGGAATTGGACCATTCCCAGGGGTAGATCTGGGGGTAT
GTTGGTGGGAATAAATGAAGACAAAATGGAAATTATGGAAGTTTCCAAGAAGAATTTTTTGTTGCATGTTAAAGTAAAAA
ATAGAAATGACAAATTTGTGTGGAGATTAATAACTGTGTATGGGGCTGCCCAGCCTGAACACAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20100.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis