Browse Element(s) Details


Os.39257.1.S1_at

Description gb:AK121150.1
DB_XREF= gi:37990773
TID=Os.39257.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078I07, full insert sequence.
FL= gb:AK121150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4334011/11Actin-depolymerizing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43270NANA12+26824462..26831682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43280Os.46995.1.S1_x_at1/1112+26832354..26835281retrotransposon protein, putative, unclassified
LOC_Os12g43290OsAffx.20100.2.S1_x_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.2.S1_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.1.S1_x_at7/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.3.S1_x_at4/1112+26836241..26838552hypothetical protein
LOC_Os12g43300OsAffx.7878.1.S1_at10/1112+26839657..26844602hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_x_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43320OsAffx.20101.1.S1_at11/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_x_at3/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_at2/1112+26848776..26849141hypothetical protein
LOC_Os12g43330OsAffx.20102.1.S1_at11/1112+26853476..26853817hypothetical protein
LOC_Os12g43340Os.39257.1.S1_at11/1112+26855164..26856653Actin-depolymerizing factor, putative, expressed
LOC_Os12g43350Os.54199.1.S1_at11/1112+26861456..26862809expressed protein
LOC_Os12g43359NANA12+26868077..26868689NA
LOC_Os12g43370Os.12322.1.S1_at11/1112+26872692..26876424Methionine aminopeptidase 2, putative, expressed
LOC_Os12g43380Os.6867.1.S1_x_at11/1112+26879510..26880232Thaumatin-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39257.1.S1_at--648--2171Chr12:26855903..26855927 (25 bp)
ACACCGCTATGTCATCTTCAAGATC
LOC_Os12g43340
Os.39257.1.S1_at--293--2131Chr12:26855845..26855869 (25 bp)
ACAGGTTCATCGACCGAGAGCTTCG
LOC_Os12g43340
Os.39257.1.S1_at--385--3631Chr12:26855825..26855849 (25 bp)
CTTCGACGATTTCATGGACTCACTC
LOC_Os12g43340
Os.39257.1.S1_at--60--2811Chr12:26855732..26855755 (24 bp)
AAGATCTTCTTCGTCGCATGGTCGC
LOC_Os12g43340
Os.39257.1.S1_at--1085--1291Chr12:26855510..26855534 (25 bp)
AGATGTTGTATGCTACCTCCAAAGA
LOC_Os12g43340
Os.39257.1.S1_at--1156--10511Chr12:26855447..26855471 (25 bp)
TTCAGGCAACTGATCCGTCGGAGCT
LOC_Os12g43340
Os.39257.1.S1_at--288--7191Chr12:26855431..26855455 (25 bp)
GTCGGAGCTGGACATTGAGCTTCTT
LOC_Os12g43340
Os.39257.1.S1_at--410--2051Chr12:26855296..26855320 (25 bp)
ACTTGCACACTGTTGAGGTACGGTT
LOC_Os12g43340
Os.39257.1.S1_at--316--1031Chr12:26855281..26855305 (25 bp)
AGGTACGGTTGTTCTGCTTCAGCTA
LOC_Os12g43340
Os.39257.1.S1_at--454--5711Chr12:26855195..26855219 (25 bp)
GACTAATTTATATACGCCTGTGCTT
LOC_Os12g43340
Os.39257.1.S1_at--79--1831Chr12:26855182..26855206 (25 bp)
ACGCCTGTGCTTTCCTTAATAGAGT
LOC_Os12g43340
Target Sequence 
ACACCGCTATGTCATCTTCAAGATCGACGACAAGTGCAAGGAGGTCGTCGTCGAAAAGACAGGTTCATCGACCGAGAGCT
TCGACGATTTCATGGACTCACTCCCTGAATCTGACTGCCGCTACGCCATCTACGACTTCGACTTCGTCACCGAGGAGAAC
TGCCAGAAGAGCAAGATCTTCTTCGTCGCATGGTCGCCTTCGGTTTCTCGCATCCGCGCCAAGATGTTGTATGCTACCTC
CAAAGAACGGTTCAGGAGAGAGCTGGATGGTGTGCACTATGAGATTCAGGCAACTGATCCGTCGGAGCTGGACATTGAGC
TTCTTAGAGAGCGTGCTCATTGAGAAAAATCAATCAATCAATCACTAGGAAATAATCATCATCTTGCATTATGAGATATT
TGTAATAGCTATTATATATGTTACTATGTACTGAAACTTGCACACTGTTGAGGTACGGTTGTTCTGCTTCAGCTATACAC
AATTTCTGTTGAAGTACAACTGTGCAAGTATGAAAAACTGTGGGTTGTCTGGTTAAGACTAATTTATATACGCCTGTGCT
TTCCTTAATAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis