Browse Element(s) Details


OsAffx.7878.1.S1_at

Description tigr:9640.m04261
TID=OsAffx.7878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4330010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43250NANA12+26812941..26814767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g43260NANA12+26817317..26819936hypothetical protein
LOC_Os12g43270NANA12+26824462..26831682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43280Os.46995.1.S1_x_at1/1112+26832354..26835281retrotransposon protein, putative, unclassified
LOC_Os12g43290OsAffx.20100.2.S1_x_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.2.S1_at11/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.1.S1_x_at7/1112+26836241..26838552hypothetical protein
LOC_Os12g43290OsAffx.20100.3.S1_x_at4/1112+26836241..26838552hypothetical protein
LOC_Os12g43300OsAffx.7878.1.S1_at10/1112+26839657..26844602hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_x_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43310OsAffx.32169.1.S1_at11/1112+26846388..26846705hypothetical protein
LOC_Os12g43320OsAffx.20101.1.S1_at11/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_x_at3/1112+26848776..26849141hypothetical protein
LOC_Os12g43320OsAffx.32169.1.S1_at2/1112+26848776..26849141hypothetical protein
LOC_Os12g43330OsAffx.20102.1.S1_at11/1112+26853476..26853817hypothetical protein
LOC_Os12g43340Os.39257.1.S1_at11/1112+26855164..26856653Actin-depolymerizing factor, putative, expressed
LOC_Os12g43350Os.54199.1.S1_at11/1112+26861456..26862809expressed protein
LOC_Os12g43359NANA12+26868077..26868689NA

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7878.1.S1_at--421--3231Chr12:26843456..26843480 (25 bp)
CAAGACTGTCGCCTGATGATGAACA
LOC_Os12g43300
OsAffx.7878.1.S1_at--475--5491Chr12:26843476..26843500 (25 bp)
GAACAGCTGCCTGACGAGGACGAGT
LOC_Os12g43300
OsAffx.7878.1.S1_at--845--8091Chr12:26843493..26843517 (25 bp)
GGACGAGTCGATTAGCCCCAAGCAA
LOC_Os12g43300
OsAffx.7878.1.S1_at--786--8371Chr12:26843522..26843546 (25 bp)
GGCGATACATGACCATTGCAGCAAT
LOC_Os12g43300
OsAffx.7878.1.S1_at--230--171Chr12:26843556..26843580 (25 bp)
ATTTTGTGTTGGTTTCCTGAGCCTC
LOC_Os12g43300
OsAffx.7878.1.S1_at--535--5851Chr12:26843574..26843598 (25 bp)
GAGCCTCTTGGCAGGTTTCTTGGGA
LOC_Os12g43300
OsAffx.7878.1.S1_at--445--8551Chr12:26843600..26843624 (25 bp)
TGGATGGCCCTGCAATCATGCTTGC
LOC_Os12g43300
OsAffx.7878.1.S1_at--891--631Chr12:26843617..26843641 (25 bp)
ATGCTTGCCGTGACTGTCATCCATT
LOC_Os12g43300
OsAffx.7878.1.S1_at--90--3591NONE
CATTCGGTCGTCCAAGATCATTCAG
NONE
OsAffx.7878.1.S1_at--862--6871Chr12:26844246..26844270 (25 bp)
GTATATAAACACACTCGTCTCGTCT
LOC_Os12g43300
OsAffx.7878.1.S1_at--688--6991Chr12:26844503..26844527 (25 bp)
GTACGAGCCGATCATCATCTGCTGC
LOC_Os12g43300
Target Sequence 
CAAGACTGTCGCCTGATGATGAACAGCTGCCTGACGAGGACGAGTCGATTAGCCCCAAGCAATGCAGGCGATACATGACC
ATTGCAGCAATTTTTGTTGGATTTTGTGTTGGTTTCCTGAGCCTCTTGGCAGGTTTCTTGGGATTGGATGGCCCTGCAAT
CATGCTTGCCGTGACTGTCATCCATTCGGTCGTCCAAGATCATTCAGAAAGTGATGGAATACGAGCAAAAGTATATAAAC
ACACTCGTCTCGTCTCGTCTCTCTTCCTCTCCATCATCATGTTTGACCACCGCTCTCCTATGGCCGGCGGCGAGGGCTTC
TTCGTCGACGTCCAGGTGGACGCCGTCCGCGCCGTGGTCATGACGCCGGCGGCCGGTGGCAACGCGCTGCGGCTGCTGGT
GCAGGAGCAGGAGCAGCGCGCCGGCGGCCGGAGGAGGACGGATGGTGGTGACAGTGAGGAAGATGACGGCGGCGACTGCC
TCCGGCCGTACGAGCCGATCATCATCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis