Browse Element(s) Details


OsAffx.20258.1.S1_at

Description tigr:9638.m02886
TID=OsAffx.20258.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance protein (3 partial)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3308010/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33040Os.46800.1.S1_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33040Os.46800.1.S2_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33050Os.56974.1.S1_at11/1110+16987465..16988532expressed protein
LOC_Os10g33060OsAffx.8033.1.S1_at11/1110+16990871..16992849Leucine Rich Repeat family protein
LOC_Os10g33070OsAffx.6844.1.S1_at11/1110+16995679..16996293hypothetical protein
LOC_Os10g33080OsAffx.20258.1.S1_at10/1110+17002072..17005527Leucine Rich Repeat family protein
LOC_Os10g33110Os.46543.2.S1_at5/1110+17017221..17020331Leucine Rich Repeat family protein
LOC_Os10g33130Os.17156.1.S1_at2/1110+17028870..17032231Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009598biological_processdetection of pathogenic bacteria
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20258.1.S1_at--1162--7071Chr10:17002552..17002576 (25 bp)
GTCAAGAAACTATCTGTCACGCAGC
LOC_Os10g33080
OsAffx.20258.1.S1_at--138--7111Chr10:17002537..17002561 (25 bp)
GTCACGCAGCATACCTGAGAACATT
LOC_Os10g33080
OsAffx.20258.1.S1_at--154--3671Chr10:17002425..17002449 (25 bp)
CTTAGCAGTCTGAATCTCTCGAATA
LOC_Os10g33080
OsAffx.20258.1.S1_at--10--9691Chr10:17002355..17002379 (25 bp)
TCACTGACCCATCAATCTACAGCAA
LOC_Os10g33080
OsAffx.20258.1.S1_at--830--2231Chr10:17002331..17002355 (25 bp)
ACAATTCTGGGCTATGTGGCCTTCC
LOC_Os10g33080
OsAffx.20258.1.S1_at--806--791Chr10:17002318..17002342 (25 bp)
ATGTGGCCTTCCGTTGAACATCTCA
LOC_Os10g33080
OsAffx.20258.1.S1_at--776--10131Chr10:17002284..17002308 (25 bp)
TATGCACTTGCATCAGACGAGAGAT
LOC_Os10g33080
OsAffx.20258.1.S1_at--817--8091Chr10:17002243..17002267 (25 bp)
GGACCAGTATCTATCGTACTTTGTG
LOC_Os10g33080
OsAffx.20258.1.S1_at--836--5312Chr07:874594..874615 (22 bp)
GAACTTAAGGTATGCCGTTTTCTGC
NONE
OsAffx.20258.1.S1_at--1157--4491Chr10:17002149..17002173 (25 bp)
GCCGTTTTCTGCTTTGTTGATGACA
LOC_Os10g33080
OsAffx.20258.1.S1_at--353--10251Chr10:17001350..17001374 (25 bp)
TTTCGGACCAAGGAACTCGGGTGCG
NONE
Target Sequence 
GTCAAGAAACTATCTGTCACGCAGCATACCTGAGAACATTGGTAGTTTGAAAAATCTTGAGTCTCTTGACCTATCATCAA
ACGAACTTTCAGGAGCCATTCCTCCAAGCCTTGCCGGTATATCTACCCTTAGCAGTCTGAATCTCTCGAATAATCATCTA
TCAGGCAAGATATCCACCGGGAATCAACTTCAAACCCTCACTGACCCATCAATCTACAGCAACAATTCTGGGCTATGTGG
CCTTCCGTTGAACATCTCATGCACAAATTATGCACTTGCATCAGACGAGAGATATTGTAGAACATGCGAGGACCAGTATC
TATCGTACTTTGTGATGGCTGGAGTGGTTTTTGGGTCTTGGCTATGGTTTGGAATGTTATTTTCAATTGGGAACTTAAGG
TATGCCGTTTTCTGCTTTGTTGATGACATTCAGCGTAAGGTTATGCAGAAGGTGTCCTTAAAAAGAGAGGGTAAAGGAGA
TTTATCGCGGGTAGAAGACGATGGTCACCTCAATTTCGGACCAAGGAACTCGGGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis